Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0621 ATGTCTCGACGTGGTGGTGGTGGCGGCGGTGGCGGTGGTCGCGGTCGAGGTGGAGGTCGCGGAGAACAGCCTACTCCGGCTGTTCATCGTGGCGGCGGCGGCGGTAGAGGTGGTGGAGGTAGAAGCGGTCGAGGCGGCGGCCGTGGTGGTAGAGATGGAGGTCGAGGAGTGCCTGCTCCTCAACAGTTTGATTCTCCGACGCCGCAGCCAACTCCGATTACTTCCCCTCCTCCTCCTCCTCCTGAAATTTCAACGGTGGCGTCTTCTTCTCGAACGGCTCCGGAGGCTTCTTCTGCGAGAATCGAGACGGCAGTGGAGAAGTTGACACTGACGACTCCGGAATTGAAAGTTCCGCCGGTTTCATCTAAGGCTCTGCCTGTTGCTAAGAGGCCGGGTTACGGAACCGTGGGCCAGAAAATGGTTGTTCGTGCGAATCATTTCCTGGTTCAAGTTGCTGATATCGATCTCTATCATTACGATATTTCAATAACACCAGAGGTTTCCTCAAAAAAGGTCTGCCGAGATATAATAACCCAGCTGGTTGAATTGTATAGACAATCCCATCTAGGTGGAAGAATTTTAGCATATGATGGTGGGAAAAGTGTTTATGTGGCTGGGGAACTTCCATTTTTATCCAAAGAATTTAAGATAAAACTAGTTCGTAAGGATGAACCAACAAGGAAAGAGCGCGAGTTTAACGTTTCGATTAAATTCGCTTCCAAGCCAGATCTCCATCATCTGCAACAATTTTTACTAGGACGACAGCGAGATATCCCACAGGAAACTATCCAAGTTCTTGATGTTGTTTTGAGAGAAACACCGTCAAACAAGTATACCGTAGTTGGAAGGTCATTTTTCCATCCGACCTTGGGACGTCCGGGTGAACTTGGTAATGGTGTTGAATATTGGAGGGGATATTATCAAAGTCTGCGTCCTGTACAGATGGGTCTATCTCTGAATATAGATGTATCAGCTAGATCCTTCTATGAACCAGTATGTGTTACAGAATTTGTTTCTATACACTTCAATCTAAGGAATTTCTCGAGGCCATTATCTGATCAGGATTGTCGAAAGATAAGAAAGGTACTTAAAGGTGTGAAGGTGGCAATAACACATAGGGAGCATGCCAGAACATACAAAATTACTGGGATGTCATCAGAACCAATAAATAAATTAATGTTTACTCTTGACGATGAGAAAACCCAGATTTCTGTTGCTCAATACTTTCGTGAAAAATATGGTTTTATGCTCAAGTTTCCATCTCTTCCCGCGCTACAAGCGGGTAACAATGCAAAGCCCATTTATTTGCCTATGGAGGTTTGTACAATTGTTGAAGGGCAGAGATATACTAAGAAATTGAATGAACGACAAGTAACGGAGATGTTAAGAGCAACGTGTCAGAGACCTGCTGATAGGCAAAATAGTATAATGGAGACGGTTAGAAGGAATGATTATACAAACGATGAATTTGTCACGGATTTTGGCATTCAAGTTAGACAACAATTGTGCGATGTTGATGCTCGAGTTTTGCCATCTCCATTGCTCAATTACCATTCAACGGGCAAAGAATCGAAAGTTAACCCTAAGATGGGTCAGTGGAATATGATCAATAAGAAAATGATCAATGGGGGTAGTGTGGAACATTGGACATGTGTGAACTTCTCTTCTCGGGTGGATCCGAGCTTGCCAGTTGAATTTTGCCATCAATTGGTTGGCATGTGTAATAGCAAGGGAATGGTTTTCAACCCTAAGCCGCTGCTTCCAATTCGGCATGCACATCCAAATCAAATTGAAAATGCACTCCGAGATATTCATAGTCAGTCTATGCAAGCTTTGGGACAGGGCAAGTGTCTCCAGTTGCTCATTATCATTTTACCGGATGTGACGGGTTCCTATGGAAAGATTAAAAAAATTTGTGAGACTGATCTTGAGCCTGGAATTGTGTCACAATGTTGCCGACCCAGGCAGGCACAGAAGCTGAACAAACAATATTTTGAAAATGTGGCTCTTAAGATAAATGTTAAGGTTGGGGGGAGAAACAATGTGTTAGATGATGCCATTAAGAAGAATATTCCTCTTGTAACGGATCGACCTACAATCATCTTTGGGGCCGATGTAACGCACCCACAACCTGGAGAGGATTCTAGTCCTTCAATAGCAGCTGTTGTTGCCTCAATGGATTGGCCCGAGGTAACGAAGTACAGAGGCATTGTTTCAGCACAAGTTCACCGTGAAGAAATAATCCAGGATTTGTATAAAACGACTCAAGACCCTCAGAGAGGAGTGGTGGCTACTGGAATGATTCGGGAACTTTTCATAGCTTTCAGAAGATCAACGAACATGAGGCCTCACAGAATAATATTCTACAGGGACGGTGTAAGTGAAGGGCAGTTCAGTCAAGTTCTGCTTTATGAGATGGATGCAATCAGAAAGGCATGTGCTTCTCTTGAGGAAGGTTACCAACCTCCTGTGACCTTTATAGTGGTGCAAAAGAGGCATCATACCCGCCTTTTTCCTACCAATAACCAGAATATCGATAGGAGCGGAAACATTCTTCCAGGTACTGTCGTGGACACAAAAATTTGCCATCCTACCGAATTTGATTTCTATTTGAACAGTCATTCTGGCATTCAGGGAACGAGTAGACCGACCCATTATCATGTTCTATTTGATGAAAATAATTTCAGTGCCGATAAAATGCAAATGCTCACCAATAGTCTATGCTACACGTACGCAAGGTGCACACGATCCGTTTCCATAGTACCGCCAGCATACTATGCCCATTTGGCTGCATTCCGTGCCCGATATTACATGGAGGGTGATGCATCTGATACTGGTTCTGTGAGTTCGGGCAGTAGGAATGTGGAGATCCAAACATTACCGAGGATTAAAGAAAATGTGAAAGATGTGATGTTTTACTGCTGA 2925 44.24 MSRRGGGGGGGGGRGRGGGRGEQPTPAVHRGGGGGRGGGGRSGRGGGRGGRDGGRGVPAPQQFDSPTPQPTPITSPPPPPPEISTVASSSRTAPEASSARIETAVEKLTLTTPELKVPPVSSKALPVAKRPGYGTVGQKMVVRANHFLVQVADIDLYHYDISITPEVSSKKVCRDIITQLVELYRQSHLGGRILAYDGGKSVYVAGELPFLSKEFKIKLVRKDEPTRKEREFNVSIKFASKPDLHHLQQFLLGRQRDIPQETIQVLDVVLRETPSNKYTVVGRSFFHPTLGRPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPVCVTEFVSIHFNLRNFSRPLSDQDCRKIRKVLKGVKVAITHREHARTYKITGMSSEPINKLMFTLDDEKTQISVAQYFREKYGFMLKFPSLPALQAGNNAKPIYLPMEVCTIVEGQRYTKKLNERQVTEMLRATCQRPADRQNSIMETVRRNDYTNDEFVTDFGIQVRQQLCDVDARVLPSPLLNYHSTGKESKVNPKMGQWNMINKKMINGGSVEHWTCVNFSSRVDPSLPVEFCHQLVGMCNSKGMVFNPKPLLPIRHAHPNQIENALRDIHSQSMQALGQGKCLQLLIIILPDVTGSYGKIKKICETDLEPGIVSQCCRPRQAQKLNKQYFENVALKINVKVGGRNNVLDDAIKKNIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQVHREEIIQDLYKTTQDPQRGVVATGMIRELFIAFRRSTNMRPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEEGYQPPVTFIVVQKRHHTRLFPTNNQNIDRSGNILPGTVVDTKICHPTEFDFYLNSHSGIQGTSRPTHYHVLFDENNFSADKMQMLTNSLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDASDTGSVSSGSRNVEIQTLPRIKENVKDVMFYC 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10603779 10609570 - MC03g0387 Mch3g0621 683524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0621 974 MobiDBLite consensus disorder prediction 63 84 - -
Mch3g0621 974 SUPERFAMILY Ribonuclease H-like 610 939 IPR012337 -
Mch3g0621 974 SMART PAZ_2_a_3 336 467 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch3g0621 974 Gene3D - 691 974 IPR036397 GO:0003676(InterPro)
Mch3g0621 974 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 130 940 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Mch3g0621 974 Gene3D paz domain 326 449 - -
Mch3g0621 974 Pfam PAZ domain 355 462 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch3g0621 974 SUPERFAMILY PAZ domain 328 485 IPR036085 GO:0005515(InterPro)
Mch3g0621 974 Pfam Argonaute linker 2 domain 471 517 IPR032472 -
Mch3g0621 974 Pfam Mid domain of argonaute 527 606 IPR032473 -
Mch3g0621 974 ProSiteProfiles Piwi domain profile. 620 939 IPR003165 GO:0003676(InterPro)
Mch3g0621 974 FunFam Argonaute 10 509 684 - -
Mch3g0621 974 SMART Piwi_a_2 620 939 IPR003165 GO:0003676(InterPro)
Mch3g0621 974 Pfam Argonaute linker 1 domain 281 330 IPR014811 -
Mch3g0621 974 Gene3D - 509 685 - -
Mch3g0621 974 CDD Piwi_ago-like 489 938 IPR045246 -
Mch3g0621 974 FunFam protein argonaute 10-like 690 974 - -
Mch3g0621 974 ProSiteProfiles PAZ domain profile. 338 445 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch3g0621 974 CDD PAZ_argonaute_like 342 444 - -
Mch3g0621 974 SMART DUF1785_2 279 331 IPR014811 -
Mch3g0621 974 Pfam Piwi domain 621 938 IPR003165 GO:0003676(InterPro)
Mch3g0621 974 MobiDBLite consensus disorder prediction 1 99 - -
Mch3g0621 974 Pfam N-terminal domain of argonaute 138 270 IPR032474 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0621 Mch-Chr3:10603779 Mch5g0550 Mch-Chr5:3690938 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0621 K11593 - csv:116403995 1463.36