Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0646 ATGCTCGTCGGAGAAGCGATGGGCGTGCACGGTGGCACTGGAACGCAGTCTGCAGACCCGGCCATGGGATTGGGAAGAGCAAAGCCGAAGGTGGTGGTGATTATGGGGCCGACCGGTTCAGGGAAGTCCCGTCTCGCCATCGATTTAGCTTCTCACTTCCCCGTGGAGATCATCAACGCCGACTCTATGCAGGTTTATCAAGGATTGGACGTTCTCACCAACAAACTCCCCCCTGAAGACCAAAATGGAGTGCTGCATCATCTTCTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCGAAAGATTTTCGAGATTCTGCCATTCCTGTTATTGATGACATAATATCTCGTGGGTGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGCCCATTTCTTCTGGATGATTCTGCAGAAAACATTGGTGAAGGTTGCTCCAGTTATCCTGGAGATGAGGTGCTCGGTATTGAGTTGGATGAGGGAAGATATCGTTTGAAGTATGACCATAACCACCTTAATGAGATTGATCCAGTTTCAGCAAACAGAATCCATCCTAATAACCACAGAAAAATAAAGCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGTCAAGCTGATAGTTTCAGATATGATTGCTGCTTGATATGTGTTGATGCATCTGTTCCACAACTTGACCAACATGTTGATTCTAGAGTTGATAGTATGATGGCTGCTGGATTACTTGATGAGGTCTATGACATTTACAATCCGAGTGCAAACTACACTAGAGGATTGCGCCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGATATTACCTACTTAAAGGAAGATGTGATAAAGATAGTGATGGAATCAGTCCAAGTAATTCAATGGAGGACTGTAATGAGATTTTGAAAGAGAATATGAGGTCAATCCTAAATTTACCAAGTGATGGTCAATCCAGTTTGCTATTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGGCAGAGGAGGCAGCTAAAGAGACTGGAAACTTTATTTGGATGGAAGATACACTATGTTGATGCCACTGAGTATATATCATGCAAAGTGGAGGATTCATGGACTGCACAAGTTGTTGAACCTGCAGTCCATATAATTAAGTCTTTCCTTGAAGATAGTTGTTTAGCAACTGAGAAAGCGACCCCACACGATTCTGGGCAAACAATAAAAAGGGACTTGTGGACACAATATATGTGCAAGGCTTGTGGGAATAAAGTACTGAGAGGAGCACATGAATGGGAGCAACACAATCAAGGGCGCACACATCGGAAACGAATATCTCGGCTTAAGAAGTGTGAAGGGCTTTCTTTGATACAACAGAAACTACCACAAAAGTAA 1449 43.27 MLVGEAMGVHGGTGTQSADPAMGLGRAKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYQGLDVLTNKLPPEDQNGVLHHLLGTVSPDVEFTAKDFRDSAIPVIDDIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENIGEGCSSYPGDEVLGIELDEGRYRLKYDHNHLNEIDPVSANRIHPNNHRKIKQYLSLYYRTGVLPSTLFQGKAAENWGQADSFRYDCCLICVDASVPQLDQHVDSRVDSMMAAGLLDEVYDIYNPSANYTRGLRQAIGVREFEEFLRYYLLKGRCDKDSDGISPSNSMEDCNEILKENMRSILNLPSDGQSSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDATEYISCKVEDSWTAQVVEPAVHIIKSFLEDSCLATEKATPHDSGQTIKRDLWTQYMCKACGNKVLRGAHEWEQHNQGRTHRKRISRLKKCEGLSLIQQKLPQK 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10923591 10930527 - MC03g0407 Mch3g0646 683549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0646 482 Gene3D - 167 218 - -
Mch3g0646 482 SUPERFAMILY beta-beta-alpha zinc fingers 426 467 IPR036236 -
Mch3g0646 482 Hamap tRNA dimethylallyltransferase [miaA]. 31 384 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Mch3g0646 482 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 30 417 IPR039657 GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER)
Mch3g0646 482 MobiDBLite consensus disorder prediction 1 22 - -
Mch3g0646 482 Pfam IPP transferase 64 364 - -
Mch3g0646 482 Gene3D - 29 431 IPR027417 -
Mch3g0646 482 FunFam tRNA dimethylallyltransferase 429 471 - -
Mch3g0646 482 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 31 293 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Mch3g0646 482 Gene3D Classic Zinc Finger 432 473 - -
Mch3g0646 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 137 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0646 Mch-Chr3:10923591 Mch5g0640 Mch-Chr5:4273404 1.09E-36 dispersed
Mch3g0646 Mch-Chr3:10923591 Mch9g0850 Mch-Chr9:6460241 5.91E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0646 K00791 - csv:101202758 776.933