Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0646 | ATGCTCGTCGGAGAAGCGATGGGCGTGCACGGTGGCACTGGAACGCAGTCTGCAGACCCGGCCATGGGATTGGGAAGAGCAAAGCCGAAGGTGGTGGTGATTATGGGGCCGACCGGTTCAGGGAAGTCCCGTCTCGCCATCGATTTAGCTTCTCACTTCCCCGTGGAGATCATCAACGCCGACTCTATGCAGGTTTATCAAGGATTGGACGTTCTCACCAACAAACTCCCCCCTGAAGACCAAAATGGAGTGCTGCATCATCTTCTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCGAAAGATTTTCGAGATTCTGCCATTCCTGTTATTGATGACATAATATCTCGTGGGTGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGCCCATTTCTTCTGGATGATTCTGCAGAAAACATTGGTGAAGGTTGCTCCAGTTATCCTGGAGATGAGGTGCTCGGTATTGAGTTGGATGAGGGAAGATATCGTTTGAAGTATGACCATAACCACCTTAATGAGATTGATCCAGTTTCAGCAAACAGAATCCATCCTAATAACCACAGAAAAATAAAGCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGTCAAGCTGATAGTTTCAGATATGATTGCTGCTTGATATGTGTTGATGCATCTGTTCCACAACTTGACCAACATGTTGATTCTAGAGTTGATAGTATGATGGCTGCTGGATTACTTGATGAGGTCTATGACATTTACAATCCGAGTGCAAACTACACTAGAGGATTGCGCCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGATATTACCTACTTAAAGGAAGATGTGATAAAGATAGTGATGGAATCAGTCCAAGTAATTCAATGGAGGACTGTAATGAGATTTTGAAAGAGAATATGAGGTCAATCCTAAATTTACCAAGTGATGGTCAATCCAGTTTGCTATTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGGCAGAGGAGGCAGCTAAAGAGACTGGAAACTTTATTTGGATGGAAGATACACTATGTTGATGCCACTGAGTATATATCATGCAAAGTGGAGGATTCATGGACTGCACAAGTTGTTGAACCTGCAGTCCATATAATTAAGTCTTTCCTTGAAGATAGTTGTTTAGCAACTGAGAAAGCGACCCCACACGATTCTGGGCAAACAATAAAAAGGGACTTGTGGACACAATATATGTGCAAGGCTTGTGGGAATAAAGTACTGAGAGGAGCACATGAATGGGAGCAACACAATCAAGGGCGCACACATCGGAAACGAATATCTCGGCTTAAGAAGTGTGAAGGGCTTTCTTTGATACAACAGAAACTACCACAAAAGTAA | 1449 | 43.27 | MLVGEAMGVHGGTGTQSADPAMGLGRAKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYQGLDVLTNKLPPEDQNGVLHHLLGTVSPDVEFTAKDFRDSAIPVIDDIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENIGEGCSSYPGDEVLGIELDEGRYRLKYDHNHLNEIDPVSANRIHPNNHRKIKQYLSLYYRTGVLPSTLFQGKAAENWGQADSFRYDCCLICVDASVPQLDQHVDSRVDSMMAAGLLDEVYDIYNPSANYTRGLRQAIGVREFEEFLRYYLLKGRCDKDSDGISPSNSMEDCNEILKENMRSILNLPSDGQSSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDATEYISCKVEDSWTAQVVEPAVHIIKSFLEDSCLATEKATPHDSGQTIKRDLWTQYMCKACGNKVLRGAHEWEQHNQGRTHRKRISRLKKCEGLSLIQQKLPQK | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10923591 | 10930527 | - | MC03g0407 | Mch3g0646 | 683549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0646 | 482 | Gene3D | - | 167 | 218 | - | - | |
Mch3g0646 | 482 | SUPERFAMILY | beta-beta-alpha zinc fingers | 426 | 467 | IPR036236 | - | |
Mch3g0646 | 482 | Hamap | tRNA dimethylallyltransferase [miaA]. | 31 | 384 | IPR018022 | GO:0008033(InterPro)|GO:0052381(InterPro) | |
Mch3g0646 | 482 | PANTHER | TRNA DIMETHYLALLYLTRANSFERASE | 30 | 417 | IPR039657 | GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER) | |
Mch3g0646 | 482 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Mch3g0646 | 482 | Pfam | IPP transferase | 64 | 364 | - | - | |
Mch3g0646 | 482 | Gene3D | - | 29 | 431 | IPR027417 | - | |
Mch3g0646 | 482 | FunFam | tRNA dimethylallyltransferase | 429 | 471 | - | - | |
Mch3g0646 | 482 | NCBIfam | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | 31 | 293 | IPR018022 | GO:0008033(InterPro)|GO:0052381(InterPro) | |
Mch3g0646 | 482 | Gene3D | Classic Zinc Finger | 432 | 473 | - | - | |
Mch3g0646 | 482 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 32 | 137 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g0646 | Mch-Chr3:10923591 | Mch5g0640 | Mch-Chr5:4273404 | 1.09E-36 | dispersed | |
Mch3g0646 | Mch-Chr3:10923591 | Mch9g0850 | Mch-Chr9:6460241 | 5.91E-58 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g0646 | K00791 | - | csv:101202758 | 776.933 |