Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0657 | ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTCTGCCTTCAATCCCCAAATTTCATAGAATGGCTTAAACCACATAGCCCTTCCTCTTCTTCCTCTCCCTCCATTTCCCTCTCTTCCTCTTCCTCTTCCTCTTCGTCGCTGAGAAACGATCGGAATTTTATCTCTCGGACCATCCAATGTGTCGCGGGGTCAAATCCTGACCAAGAATGTTTCGCTTCTCGATGCCTGCCTCTGTTCTTGGAGACGAAGGCTTCGATGAAGAAGGAAGAAGAAGGGCAATATCTCGAAGTTAAGGAAGAGGATGGAGATAGGGAGAAAGTTGAAGTGGGTCTGCACATTGGACTGCCGAACATGGGCGATGTCTTGGTGGCGGAGCGGAACATGAATGTTTGTGTCAAGAAAGAAGAGAGCGTCAAGAAAAGCTTCCCCAGTTTTAACACACAAGGAAGGTTTTGGATCCCAACACCGGCGCAGATCCTCGTCGGGCCGATGCAGTTTGCTTGCTCTATCTGCAACAAGTCCTTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCACGGATCCGAGTACAGAAAAGGGCCAGAATCCCTCCGAGGGACGCAGCCAGCAGCAATGCTGAGGCTGCCATGCTTCTGCTGCGCCCAAGGCTGCAAGAACAACATAAACCATCCAAGAGCCAAGCCACTGAAGGACTTCAGAACCCTCCAAACCCACTACAAGAGAAAGCATGGCTCCAAGCCCTTCATGTGCAGAAAATGTGGCAAAACTTTGGCTGTCAAAGGAGACTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTTCTGCACCTGTGGCTCAGATTTCAAGCACAAGAGATCCCTCAAAGACCACATCAGATCCTTTGGCAAAGGTCATTCCCCTCTCTGCCCTGTCCTTGAAGATCATGATAAAGAATATTGCCTCACTGCCTCTGAACAAGAAGATGAGTAG | 984 | 48.78 | MGLRNHMAEENIFCLQSPNFIEWLKPHSPSSSSSPSISLSSSSSSSSSLRNDRNFISRTIQCVAGSNPDQECFASRCLPLFLETKASMKKEEEGQYLEVKEEDGDREKVEVGLHIGLPNMGDVLVAERNMNVCVKKEESVKKSFPSFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCFCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWFCTCGSDFKHKRSLKDHIRSFGKGHSPLCPVLEDHDKEYCLTASEQEDE | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11028229 | 11031510 | - | MC03g0414 | Mch3g0657 | 683560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0657 | 327 | Pfam | Zinc finger, C2H2 type | 168 | 187 | IPR013087 | - | |
Mch3g0657 | 327 | SUPERFAMILY | beta-beta-alpha zinc fingers | 237 | 272 | IPR036236 | - | |
Mch3g0657 | 327 | Gene3D | Classic Zinc Finger | 248 | 305 | - | - | |
Mch3g0657 | 327 | SMART | c2h2final6 | 168 | 190 | IPR013087 | - | |
Mch3g0657 | 327 | SMART | c2h2final6 | 215 | 247 | IPR013087 | - | |
Mch3g0657 | 327 | SMART | c2h2final6 | 252 | 272 | IPR013087 | - | |
Mch3g0657 | 327 | PANTHER | ZINC FINGER PROTEIN WIP2 | 17 | 316 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Mch3g0657 | 327 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 251 | 275 | - | - | |
Mch3g0657 | 327 | SUPERFAMILY | beta-beta-alpha zinc fingers | 159 | 191 | IPR036236 | - | |
Mch3g0657 | 327 | Gene3D | Classic Zinc Finger | 167 | 190 | - | - | |
Mch3g0657 | 327 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 168 | 195 | IPR013087 | - | |
Mch3g0657 | 327 | FunFam | Zinc finger protein WIP2 | 221 | 303 | - | - | |
Mch3g0657 | 327 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 170 | 190 | IPR013087 | - | |
Mch3g0657 | 327 | MobiDBLite | consensus disorder prediction | 30 | 50 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g0657 | Mch-Chr3:11028229 | Mch5g1409 | Mch-Chr5:15143728 | 4.44E-102 | dispersed | |
Mch3g0657 | Mch-Chr3:11028229 | Mch2g0130 | Mch-Chr2:990887 | 4.05E-103 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43004 | None | None | None | None | Mch | TF |
Pathway information
