Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0657 ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTCTGCCTTCAATCCCCAAATTTCATAGAATGGCTTAAACCACATAGCCCTTCCTCTTCTTCCTCTCCCTCCATTTCCCTCTCTTCCTCTTCCTCTTCCTCTTCGTCGCTGAGAAACGATCGGAATTTTATCTCTCGGACCATCCAATGTGTCGCGGGGTCAAATCCTGACCAAGAATGTTTCGCTTCTCGATGCCTGCCTCTGTTCTTGGAGACGAAGGCTTCGATGAAGAAGGAAGAAGAAGGGCAATATCTCGAAGTTAAGGAAGAGGATGGAGATAGGGAGAAAGTTGAAGTGGGTCTGCACATTGGACTGCCGAACATGGGCGATGTCTTGGTGGCGGAGCGGAACATGAATGTTTGTGTCAAGAAAGAAGAGAGCGTCAAGAAAAGCTTCCCCAGTTTTAACACACAAGGAAGGTTTTGGATCCCAACACCGGCGCAGATCCTCGTCGGGCCGATGCAGTTTGCTTGCTCTATCTGCAACAAGTCCTTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCACGGATCCGAGTACAGAAAAGGGCCAGAATCCCTCCGAGGGACGCAGCCAGCAGCAATGCTGAGGCTGCCATGCTTCTGCTGCGCCCAAGGCTGCAAGAACAACATAAACCATCCAAGAGCCAAGCCACTGAAGGACTTCAGAACCCTCCAAACCCACTACAAGAGAAAGCATGGCTCCAAGCCCTTCATGTGCAGAAAATGTGGCAAAACTTTGGCTGTCAAAGGAGACTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTTCTGCACCTGTGGCTCAGATTTCAAGCACAAGAGATCCCTCAAAGACCACATCAGATCCTTTGGCAAAGGTCATTCCCCTCTCTGCCCTGTCCTTGAAGATCATGATAAAGAATATTGCCTCACTGCCTCTGAACAAGAAGATGAGTAG 984 48.78 MGLRNHMAEENIFCLQSPNFIEWLKPHSPSSSSSPSISLSSSSSSSSSLRNDRNFISRTIQCVAGSNPDQECFASRCLPLFLETKASMKKEEEGQYLEVKEEDGDREKVEVGLHIGLPNMGDVLVAERNMNVCVKKEESVKKSFPSFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCFCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWFCTCGSDFKHKRSLKDHIRSFGKGHSPLCPVLEDHDKEYCLTASEQEDE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11028229 11031510 - MC03g0414 Mch3g0657 683560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0657 327 Pfam Zinc finger, C2H2 type 168 187 IPR013087 -
Mch3g0657 327 SUPERFAMILY beta-beta-alpha zinc fingers 237 272 IPR036236 -
Mch3g0657 327 Gene3D Classic Zinc Finger 248 305 - -
Mch3g0657 327 SMART c2h2final6 168 190 IPR013087 -
Mch3g0657 327 SMART c2h2final6 215 247 IPR013087 -
Mch3g0657 327 SMART c2h2final6 252 272 IPR013087 -
Mch3g0657 327 PANTHER ZINC FINGER PROTEIN WIP2 17 316 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Mch3g0657 327 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 251 275 - -
Mch3g0657 327 SUPERFAMILY beta-beta-alpha zinc fingers 159 191 IPR036236 -
Mch3g0657 327 Gene3D Classic Zinc Finger 167 190 - -
Mch3g0657 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Mch3g0657 327 FunFam Zinc finger protein WIP2 221 303 - -
Mch3g0657 327 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Mch3g0657 327 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0657 Mch-Chr3:11028229 Mch5g1409 Mch-Chr5:15143728 4.44E-102 dispersed
Mch3g0657 Mch-Chr3:11028229 Mch2g0130 Mch-Chr2:990887 4.05E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43004 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0657 - - - 0.0