Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0661 | ATGGCGAACCACCGATTGGGGGACTCGGGTTTATCAAACTCTGCTCCCTTTGCGGCCTTCCATGGAATCCCCCATAACCCATCTCCCAGTTTCATAAATCAAGAAGGCCCAGCTTTTGATTTTGGGGAGCTAGAAGAAGCCATAGTTCTGCAGGGGGTGAAGCTCGGAAATAATGAAGAACCCAAATCGCCACATTTTCTCACAGGGAGGCCTGCTGCAACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTCCAACAGACCCCAAGATTGGGAGGTTCAAAGTCAGGGGGAGAGAGCACAGATTCAGGATCAGGAAATATGAACAAATTAGAAATGGAAATGGAGGCTGAATCTCCAGTTAGCAGAAGGGCATGTTCTTCTTCAACTCAGGGATTTGACCAAATTCATCAACATCATCTTCAACTTCAAAATCTTCAAACAGAGATGGAAGATGATGATGCCTTGAGAACAGAGCCATCATCTCAATCCCCTGCCAAAGAGAAGAGAAAAGGTGCTGGTTCAAGTTCAGAGAGGCAGCTCGATGCCAAGACACTTAGACGTTTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAATCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTCAGGGGTTGTTTTTGGGTGCTTGTGGTGGTGTTATGGGTGGCAATATCAGCTCCGGAGCGGCAATATTTGATATGGAATATGCGCGGTGGCTAGACGACGACCACCGTCTGATGGCGGAGCTGAGAGCGGCGCTGCAGGGGCAGTTGCCGGACGGCGATATGCGGGCAATAGTAGACAGTTATATCTCTCACTACGACGAAATTTTCCAGCTGAAAGGAGTGGCCGCAAAATCTGACGTCTTTCATCTCATCACCGGAATGTGGATGACGCCGGCGGAGCGTTGCTTCCTCTGGATCGGCGGTTTCCGGCCATCAAAGCTCATAGAGATGTTAATTCCACAATTAGATACATTGACGGATCAACAGGCGATGGGAATCTGTAGTTTGCAACGATCTTCTCACGAAACAGAGGATGCTCTGTATCAGGGGCTGGAGCAGCTGCAGCATTCTCTGATAATCACCATCGCCGGCGGCGCCGTCCTCGACGGCATCAACCAAATGGCCGCCGCCGCCGGGAAGCTCGCCAATCTTGAAGGTTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCACCAATTACGTCGAATATTGACAGTTCGACAGGCAGCACGATGTTTCGTGGTGATTGGAGAGTACTATGGAAGGTTACGAGCTCTTAGTTCCTTGTGGATCTCCCGACCAAGAGAGAACTGCCTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTGCAGATGATTCAGAATTCCCACACCCATTTCCCAAACTTTTGA | 1467 | 48.88 | MANHRLGDSGLSNSAPFAAFHGIPHNPSPSFINQEGPAFDFGELEEAIVLQGVKLGNNEEPKSPHFLTGRPAATLEMFPSWPIRFQQTPRLGGSKSGGESTDSGSGNMNKLEMEMEAESPVSRRACSSSTQGFDQIHQHHLQLQNLQTEMEDDDALRTEPSSQSPAKEKRKGAGSSSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDDDHRLMAELRAALQGQLPDGDMRAIVDSYISHYDEIFQLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTDQQAMGICSLQRSSHETEDALYQGLEQLQHSLIITIAGGAVLDGINQMAAAAGKLANLEGFIRQADMLRQQTLHQLRRILTVRQAARCFVVIGEYYGRLRALSSLWISRPRENCLNDENSCQTTTELQMIQNSHTHFPNF | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11100891 | 11106872 | - | MC03g0418 | Mch3g0661 | 683564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0661 | 488 | FunFam | BZIP family transcription factor | 183 | 232 | - | - | |
Mch3g0661 | 488 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 187 | 202 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch3g0661 | 488 | MobiDBLite | consensus disorder prediction | 87 | 108 | - | - | |
Mch3g0661 | 488 | Gene3D | - | 183 | 232 | - | - | |
Mch3g0661 | 488 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 182 | 226 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch3g0661 | 488 | Pfam | Seed dormancy control | 267 | 341 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch3g0661 | 488 | MobiDBLite | consensus disorder prediction | 151 | 186 | - | - | |
Mch3g0661 | 488 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 130 | 461 | - | - | |
Mch3g0661 | 488 | SMART | brlzneu | 180 | 246 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch3g0661 | 488 | SUPERFAMILY | Leucine zipper domain | 184 | 226 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch3g0661 | 488 | MobiDBLite | consensus disorder prediction | 86 | 108 | - | - | |
Mch3g0661 | 488 | Coils | Coil | 203 | 230 | - | - | |
Mch3g0661 | 488 | CDD | bZIP_HBP1b-like | 184 | 235 | - | - | |
Mch3g0661 | 488 | ProSiteProfiles | DOG1 domain profile. | 249 | 457 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch3g0661 | 488 | Pfam | bZIP transcription factor | 183 | 224 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g0661 | Mch-Chr3:11100891 | Mch4g2646 | Mch-Chr4:26572233 | 3.22E-77 | dispersed | |
Mch10g0715 | Mch-Chr10:4939660 | Mch3g0661 | Mch-Chr3:11100891 | 3.84E-82 | transposed | |
Mch4g1324 | Mch-Chr4:16395214 | Mch3g0661 | Mch-Chr3:11100891 | 3.83E-103 | transposed | |
Mch5g1294 | Mch-Chr5:13803086 | Mch3g0661 | Mch-Chr3:11100891 | 1.30E-102 | transposed | |
Mch5g1417 | Mch-Chr5:15275651 | Mch3g0661 | Mch-Chr3:11100891 | 5.38E-108 | transposed | |
Mch8g0171 | Mch-Chr8:1092042 | Mch3g0661 | Mch-Chr3:11100891 | 7.14E-106 | transposed | |
Mch9g1723 | Mch-Chr9:19194764 | Mch3g0661 | Mch-Chr3:11100891 | 1.19E-102 | transposed | |
Mch2g0253 | Mch-Chr2:1875375 | Mch3g0661 | Mch-Chr3:11100891 | 2.18E-167 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43005 | PF14144 | DOG1 | 6.90E-30 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g0661 | K14431 | - | csv:101204604 | 796.964 |