Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0661 ATGGCGAACCACCGATTGGGGGACTCGGGTTTATCAAACTCTGCTCCCTTTGCGGCCTTCCATGGAATCCCCCATAACCCATCTCCCAGTTTCATAAATCAAGAAGGCCCAGCTTTTGATTTTGGGGAGCTAGAAGAAGCCATAGTTCTGCAGGGGGTGAAGCTCGGAAATAATGAAGAACCCAAATCGCCACATTTTCTCACAGGGAGGCCTGCTGCAACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTCCAACAGACCCCAAGATTGGGAGGTTCAAAGTCAGGGGGAGAGAGCACAGATTCAGGATCAGGAAATATGAACAAATTAGAAATGGAAATGGAGGCTGAATCTCCAGTTAGCAGAAGGGCATGTTCTTCTTCAACTCAGGGATTTGACCAAATTCATCAACATCATCTTCAACTTCAAAATCTTCAAACAGAGATGGAAGATGATGATGCCTTGAGAACAGAGCCATCATCTCAATCCCCTGCCAAAGAGAAGAGAAAAGGTGCTGGTTCAAGTTCAGAGAGGCAGCTCGATGCCAAGACACTTAGACGTTTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAATCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTCAGGGGTTGTTTTTGGGTGCTTGTGGTGGTGTTATGGGTGGCAATATCAGCTCCGGAGCGGCAATATTTGATATGGAATATGCGCGGTGGCTAGACGACGACCACCGTCTGATGGCGGAGCTGAGAGCGGCGCTGCAGGGGCAGTTGCCGGACGGCGATATGCGGGCAATAGTAGACAGTTATATCTCTCACTACGACGAAATTTTCCAGCTGAAAGGAGTGGCCGCAAAATCTGACGTCTTTCATCTCATCACCGGAATGTGGATGACGCCGGCGGAGCGTTGCTTCCTCTGGATCGGCGGTTTCCGGCCATCAAAGCTCATAGAGATGTTAATTCCACAATTAGATACATTGACGGATCAACAGGCGATGGGAATCTGTAGTTTGCAACGATCTTCTCACGAAACAGAGGATGCTCTGTATCAGGGGCTGGAGCAGCTGCAGCATTCTCTGATAATCACCATCGCCGGCGGCGCCGTCCTCGACGGCATCAACCAAATGGCCGCCGCCGCCGGGAAGCTCGCCAATCTTGAAGGTTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCACCAATTACGTCGAATATTGACAGTTCGACAGGCAGCACGATGTTTCGTGGTGATTGGAGAGTACTATGGAAGGTTACGAGCTCTTAGTTCCTTGTGGATCTCCCGACCAAGAGAGAACTGCCTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTGCAGATGATTCAGAATTCCCACACCCATTTCCCAAACTTTTGA 1467 48.88 MANHRLGDSGLSNSAPFAAFHGIPHNPSPSFINQEGPAFDFGELEEAIVLQGVKLGNNEEPKSPHFLTGRPAATLEMFPSWPIRFQQTPRLGGSKSGGESTDSGSGNMNKLEMEMEAESPVSRRACSSSTQGFDQIHQHHLQLQNLQTEMEDDDALRTEPSSQSPAKEKRKGAGSSSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDDDHRLMAELRAALQGQLPDGDMRAIVDSYISHYDEIFQLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTDQQAMGICSLQRSSHETEDALYQGLEQLQHSLIITIAGGAVLDGINQMAAAAGKLANLEGFIRQADMLRQQTLHQLRRILTVRQAARCFVVIGEYYGRLRALSSLWISRPRENCLNDENSCQTTTELQMIQNSHTHFPNF 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11100891 11106872 - MC03g0418 Mch3g0661 683564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0661 488 FunFam BZIP family transcription factor 183 232 - -
Mch3g0661 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch3g0661 488 MobiDBLite consensus disorder prediction 87 108 - -
Mch3g0661 488 Gene3D - 183 232 - -
Mch3g0661 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch3g0661 488 Pfam Seed dormancy control 267 341 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch3g0661 488 MobiDBLite consensus disorder prediction 151 186 - -
Mch3g0661 488 PANTHER TRANSCRIPTION FACTOR TGA9 130 461 - -
Mch3g0661 488 SMART brlzneu 180 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch3g0661 488 SUPERFAMILY Leucine zipper domain 184 226 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch3g0661 488 MobiDBLite consensus disorder prediction 86 108 - -
Mch3g0661 488 Coils Coil 203 230 - -
Mch3g0661 488 CDD bZIP_HBP1b-like 184 235 - -
Mch3g0661 488 ProSiteProfiles DOG1 domain profile. 249 457 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch3g0661 488 Pfam bZIP transcription factor 183 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0661 Mch-Chr3:11100891 Mch4g2646 Mch-Chr4:26572233 3.22E-77 dispersed
Mch10g0715 Mch-Chr10:4939660 Mch3g0661 Mch-Chr3:11100891 3.84E-82 transposed
Mch4g1324 Mch-Chr4:16395214 Mch3g0661 Mch-Chr3:11100891 3.83E-103 transposed
Mch5g1294 Mch-Chr5:13803086 Mch3g0661 Mch-Chr3:11100891 1.30E-102 transposed
Mch5g1417 Mch-Chr5:15275651 Mch3g0661 Mch-Chr3:11100891 5.38E-108 transposed
Mch8g0171 Mch-Chr8:1092042 Mch3g0661 Mch-Chr3:11100891 7.14E-106 transposed
Mch9g1723 Mch-Chr9:19194764 Mch3g0661 Mch-Chr3:11100891 1.19E-102 transposed
Mch2g0253 Mch-Chr2:1875375 Mch3g0661 Mch-Chr3:11100891 2.18E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43005 PF14144 DOG1 6.90E-30 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0661 K14431 - csv:101204604 796.964