Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g0773 | ATGACCAGAAAGAAGGTGAAGCTGGCGTTCATCTCCAACGACGCAGCAAGAAAGGCCACCTTCAAGAAAAGGAAAAAGGGTTTGCTAAAGAAGGTGACAGAATTGAGCACCCTGTGCGGGATCGACGCCTGCGCCATAATCTTCAGCCCCTTCAGCGCCCAGCCGGAGCTGTGGCCCTCCGCCGTGGGGGTGCAGCGGGTGCTGGCCCACTTCCGGACCATGCCGGAGATGGAGCAGACCAAGAAAATGGTCAACCAAGAGTCCTTCCTCCGCCACCGGATCGCCAAGGCCGCCGACCAGCTCAAGCGCCACCAGAGGGAGAATCGCGAGAAGGAGATGACGAGGCTCATGTTTCAGAGCCTCGTCGCCGGAGGGCTGCCGCCGCCCGGGTTGAGTATGGTTGATTTGAACGATCTTGGGTGGGTGGTTGATCAGAATGTGGTGGATGTTTGTAAGAGGATGGAGTTGCTTGCCAAGGCGACGGCGGTGGCGGCGGTGGACCAAACGCCGTATGTGCCCGCGGCGGAGCCGCCGTGGGTCATGGAGATGGTGAGCCAGAGAGATGATGATCAAATGGGGTTCAATGTTGGAGGGGATGATGTGATTCTTCCTTTTGGGGATGAGAATCATGGGGGGTTTTGGTCAAATAATGGCTTCTTCCCT | 663 | 57.62 | MTRKKVKLAFISNDAARKATFKKRKKGLLKKVTELSTLCGIDACAIIFSPFSAQPELWPSAVGVQRVLAHFRTMPEMEQTKKMVNQESFLRHRIAKAADQLKRHQRENREKEMTRLMFQSLVAGGLPPPGLSMVDLNDLGWVVDQNVVDVCKRMELLAKATAVAAVDQTPYVPAAEPPWVMEMVSQRDDDQMGFNVGGDDVILPFGDENHGGFWSNNGFFP | 221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 11896321 | 11896983 | - | MC03g0507 | Mch3g0773 | 683676 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g0773 | 221 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | PANTHER | MADS BOX PROTEIN | 1 | 115 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch3g0773 | 221 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
| Mch3g0773 | 221 | Coils | Coil | 87 | 114 | - | - | |
| Mch3g0773 | 221 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
| Mch3g0773 | 221 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch3g0773 | 221 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g0773 | Mch-Chr3:11896321 | Mch6g2744 | Mch-Chr6:28984068 | 1.73E-76 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43011 | PF00319 | SRF-TF | 3.40E-18 | No_clan | Mch | TF |
Pathway information