Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0773 ATGACCAGAAAGAAGGTGAAGCTGGCGTTCATCTCCAACGACGCAGCAAGAAAGGCCACCTTCAAGAAAAGGAAAAAGGGTTTGCTAAAGAAGGTGACAGAATTGAGCACCCTGTGCGGGATCGACGCCTGCGCCATAATCTTCAGCCCCTTCAGCGCCCAGCCGGAGCTGTGGCCCTCCGCCGTGGGGGTGCAGCGGGTGCTGGCCCACTTCCGGACCATGCCGGAGATGGAGCAGACCAAGAAAATGGTCAACCAAGAGTCCTTCCTCCGCCACCGGATCGCCAAGGCCGCCGACCAGCTCAAGCGCCACCAGAGGGAGAATCGCGAGAAGGAGATGACGAGGCTCATGTTTCAGAGCCTCGTCGCCGGAGGGCTGCCGCCGCCCGGGTTGAGTATGGTTGATTTGAACGATCTTGGGTGGGTGGTTGATCAGAATGTGGTGGATGTTTGTAAGAGGATGGAGTTGCTTGCCAAGGCGACGGCGGTGGCGGCGGTGGACCAAACGCCGTATGTGCCCGCGGCGGAGCCGCCGTGGGTCATGGAGATGGTGAGCCAGAGAGATGATGATCAAATGGGGTTCAATGTTGGAGGGGATGATGTGATTCTTCCTTTTGGGGATGAGAATCATGGGGGGTTTTGGTCAAATAATGGCTTCTTCCCT 663 57.62 MTRKKVKLAFISNDAARKATFKKRKKGLLKKVTELSTLCGIDACAIIFSPFSAQPELWPSAVGVQRVLAHFRTMPEMEQTKKMVNQESFLRHRIAKAADQLKRHQRENREKEMTRLMFQSLVAGGLPPPGLSMVDLNDLGWVVDQNVVDVCKRMELLAKATAVAAVDQTPYVPAAEPPWVMEMVSQRDDDQMGFNVGGDDVILPFGDENHGGFWSNNGFFP 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11896321 11896983 - MC03g0507 Mch3g0773 683676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0773 221 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch3g0773 221 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Mch3g0773 221 Coils Coil 87 114 - -
Mch3g0773 221 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mch3g0773 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g0773 221 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0773 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0773 Mch-Chr3:11896321 Mch6g2744 Mch-Chr6:28984068 1.73E-76 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1734 . 1 257 Type I MADS-box Gene Family AT2G03060 52.3 8.5e-67 251.1
Mch10g0403 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 6.7e-51 198.0
Mch6g2744 . 1 156 Type I MADS-box Gene Family AT5G48670 66.0 7.7e-53 204.5
Mch3g0773 . 1 176 Type I MADS-box Gene Family AT5G48670 58.0 4.7e-50 195.3
Mch3g1734 . 1 257 Type I MADS-box Gene Family AT2G03060 52.3 8.5e-67 251.1
Mch10g0403 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 6.7e-51 198.0
Mch6g2744 . 1 156 Type I MADS-box Gene Family AT5G48670 66.0 7.7e-53 204.5
Mch3g0773 . 1 176 Type I MADS-box Gene Family AT5G48670 58.0 4.7e-50 195.3
Mch3g1734 . 1 257 Type I MADS-box Gene Family AT2G03060 52.3 8.5e-67 251.1
Mch10g0403 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 6.7e-51 198.0
Mch6g2744 . 1 156 Type I MADS-box Gene Family AT5G48670 66.0 7.7e-53 204.5
Mch3g0773 . 1 176 Type I MADS-box Gene Family AT5G48670 58.0 4.7e-50 195.3
Mch3g1734 . 1 257 Type I MADS-box Gene Family AT2G03060 52.3 8.5e-67 251.1
Mch10g0403 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 6.7e-51 198.0
Mch6g2744 . 1 156 Type I MADS-box Gene Family AT5G48670 66.0 7.7e-53 204.5
Mch3g0773 . 1 176 Type I MADS-box Gene Family AT5G48670 58.0 4.7e-50 195.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43011 PF00319 SRF-TF 3.40E-18 No_clan Mch TF