Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0804 GTTGCAGTTCAAGCTTTGCAAGTTATATACACTTCATTGAACAGTCCTCCTCAGCTAACTGGTTGGATTAGTAGCGGCGGCGATCCATGTGCAGAGTCATGGAAAGGGGTGATTTGTGATGGGCCCGCAGTCGTTTCCATCGAGATTTCTGGGTTAGGGCTGAATGGCACGATGGGTTACATGCTATCAAGTTTTTTGTCATTGAAAAAGCTTGATATGAGCGACAACAATATTCACGACACGATCCCTTACCAGTTGCCGCCGAACCTCACAAGCCTAAACATGGCAAAAAACAACTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCCTCTCTAAATTATCTGAATATGAGCCATAATTTGCTATCCCAGGCGATAGGAGACGTTTTCACCAATCTTACCACCCTAGGGACCTTGGACCTTTCTTTCAACAGCTTTATTGGGGATCTTCCTAATTCCTTGAGCTCATTATCCAATGTTTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAGTCTTATCAGTTTGCCTTTGACCACTCTAAATGTGGCAAATAATCATTTCAGTGGATGGATACCAAAAGAACTGAGTTCAATCGAAAATTTCATATATGATGGAAATTCATTTGATAATGGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGAAATGGCACGAAACATCCAGGATCTGGCAGTGGCACCCATACCGCCCCAAGTTCTGATGGCAGCTCATCCCACTCAAATAAAGGCTTGCCTGTTTTGGCAATAGTGGGGATAATTCTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTATGCGTCCAGAAGAGAAAACGAAAGAACATCGGTCTTAGAGCTTCCAGTGGAAGGCTCTCTACTGGCACTAGTGTGAATGCTGAGGTGCAAGAGCACCGGGTAAAAAGCGTTGCTGCTGTTGCCGATATTAAGCCTCTACCTGCAGAGAAAATGAATTCTGAGAGATTACAAGCGAAGAATGGATCTGTGAAAAGAATAAAGTCCCCTATTACTTCGACTTCTTACACCGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAACCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAGAGCAGAGTTTCCGAACGGGAAGACAATGGCAATTAAGAAAATCGACAATGCAGCATTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTCTCGAACATGTCAAGATTGAGGCACGCAAACATTGTCACACTAAATGGGTATTGTGCAGAGCATGGGCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACACGCTCCATTTTGCTGAAGATAGTAGTAAGACGCTGACTTGGAATGCACGTGTCCGAGTAGCACTTGGAACCGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGCGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAGATGGTTGGTTCCTTCGGCTACAGTGCTCCAGAATTTGCCTTGTCTGGTGTATACACTGTAAAAAGTGATGTGTACAGCTTCGGAGTGGTGATGTTGGAGCTCTTGACCGGCCGAAAGCCACTCGACAGTTCCAGGGTAAGATCGGAGCAGTCACTTGTGAGATGGGCCACTCCCCAACTTCATGATATAGACTCCTTAGCGAAAATGGTAGATCCCACTTTGAACGGAATGTACCCTGCAAAATCTCTGTCACGGTTTGCCGATATCATCGCGCTCTGCGTTCAGCCCGAACCCGAATTTCGACCTCCGATGTCCGAAGTAGTACAAGCCTTGGTGCGTTTAGTACAAAGGGCCAGTGTGGTAAAAAGGCATTCGAGTGACGAGTCGGGTTTCTCTTATAAAACACCCGACCACGATGCAGTCGAGTTGCCATTTTGA 2055 44.96 VAVQALQVIYTSLNSPPQLTGWISSGGDPCAESWKGVICDGPAVVSIEISGLGLNGTMGYMLSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNSFIGDLPNSLSSLSNVSSLFLQNNQLTGSLNSLISLPLTTLNVANNHFSGWIPKELSSIENFIYDGNSFDNGPAPPPPPFTPPPPGRSRNGTKHPGSGSGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCVQKRKRKNIGLRASSGRLSTGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNSERLQAKNGSVKRIKSPITSTSYTVASLQSATNSFNQECIVGEGSLGRVYRAEFPNGKTMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHANIVTLNGYCAEHGQRLLVYEFIGNGSLHDTLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDSLAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12118111 12122662 - MC03g0535 Mch3g0804 683707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0804 684 MobiDBLite consensus disorder prediction 238 259 - -
Mch3g0804 684 ProSiteProfiles Protein kinase domain profile. 376 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0804 684 MobiDBLite consensus disorder prediction 214 259 - -
Mch3g0804 684 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 226 - -
Mch3g0804 684 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 341 453 - -
Mch3g0804 684 MobiDBLite consensus disorder prediction 217 235 - -
Mch3g0804 684 Gene3D Ribonuclease Inhibitor 2 224 IPR032675 -
Mch3g0804 684 CDD STKc_IRAK 382 653 - -
Mch3g0804 684 Gene3D Phosphorylase Kinase; domain 1 336 453 - -
Mch3g0804 684 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515(InterPro)
Mch3g0804 684 Gene3D Transferase(Phosphotransferase) domain 1 454 677 - -
Mch3g0804 684 Pfam Leucine rich repeat N-terminal domain 3 40 IPR013210 -
Mch3g0804 684 Pfam Leucine Rich Repeat 184 204 IPR001611 GO:0005515(InterPro)
Mch3g0804 684 Pfam Leucine Rich Repeat 67 86 IPR001611 GO:0005515(InterPro)
Mch3g0804 684 Pfam Protein tyrosine and serine/threonine kinase 380 650 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g0804 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 182 655 IPR046959 -
Mch3g0804 684 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 454 664 - -
Mch3g0804 684 SUPERFAMILY Protein kinase-like (PK-like) 356 650 IPR011009 -
Mch3g0804 684 SUPERFAMILY L domain-like 15 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0804 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0804 Mch-Chr3:12118111 Mch9g0166 Mch-Chr9:1268020 2.30E-164 dispersed
Mch7g0025 Mch-Chr7:223736 Mch3g0804 Mch-Chr3:12118111 5.10E-37 dispersed
Mch3g0804 Mch-Chr3:12118111 Mch8g1013 Mch-Chr8:7183135 2.38E-180 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77250 PF07714 PK_Tyr_Ser-Thr 6.90E-44 CL0016 Mch PK