Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0858 ATGGTAGAAATTAGAGGTGAGGGGAGAGAGTCCATTGTCCAGCAGATGAAGGAGAGCGGGCGGAAACAAGGTGGTCAGGGGACGGCGGCGGCACCGTGCGCGGCGTGCAAGCTTCTCCGGAGGCGGTGTGCGGAGGAGTGTGTTTTCGCGCCATATTTCCCCGCTGACCAACCCCACAAATTCGCCAATGTCCACAAGGTCTTCGGTGCAAGTAACATCAACAAAATGCTCCAGGAGTTGCCAGTTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCGAACGCTCGGGTTCGTGACCCGGTCTACGGGTGCGTTGGGGCCATATCGTCTCTCCAGCAGCAAATAGACACCCTCCAAACTCAGCTGGCTCTGGCTCAAGCCGAGGTGGTGCACCTTAGGGTGCGCCAGACAGCGTCGTTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCAGGCCCATATTTGAGATGGATATGGGGGACTCAATGTGGTGA 546 56.59 MVEIRGEGRESIVQQMKESGRKQGGQGTAAAPCAACKLLRRRCAEECVFAPYFPADQPHKFANVHKVFGASNINKMLQELPVHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPIFEMDMGDSMW 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12548946 12551260 - MC03g0580 Mch3g0858 683761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0858 181 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Mch3g0858 181 Pfam Lateral organ boundaries (LOB) domain 32 129 IPR004883 -
Mch3g0858 181 Coils Coil 111 138 - -
Mch3g0858 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 142 - -
Mch3g0858 181 MobiDBLite consensus disorder prediction 146 169 - -
Mch3g0858 181 MobiDBLite consensus disorder prediction 146 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0184 Mch-Chr10:1118245 Mch3g0858 Mch-Chr3:12548946 1.47E-40 dispersed
Mch3g0858 Mch-Chr3:12548946 Mch9g1433 Mch-Chr9:16724604 7.79E-57 dispersed
Mch3g0858 Mch-Chr3:12548946 Mch2g0739 Mch-Chr2:5062145 1.10E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43015 PF03195 LOB 7.30E-44 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0858 - - - 0.0