Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0858 | ATGGTAGAAATTAGAGGTGAGGGGAGAGAGTCCATTGTCCAGCAGATGAAGGAGAGCGGGCGGAAACAAGGTGGTCAGGGGACGGCGGCGGCACCGTGCGCGGCGTGCAAGCTTCTCCGGAGGCGGTGTGCGGAGGAGTGTGTTTTCGCGCCATATTTCCCCGCTGACCAACCCCACAAATTCGCCAATGTCCACAAGGTCTTCGGTGCAAGTAACATCAACAAAATGCTCCAGGAGTTGCCAGTTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCGAACGCTCGGGTTCGTGACCCGGTCTACGGGTGCGTTGGGGCCATATCGTCTCTCCAGCAGCAAATAGACACCCTCCAAACTCAGCTGGCTCTGGCTCAAGCCGAGGTGGTGCACCTTAGGGTGCGCCAGACAGCGTCGTTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCAGGCCCATATTTGAGATGGATATGGGGGACTCAATGTGGTGA | 546 | 56.59 | MVEIRGEGRESIVQQMKESGRKQGGQGTAAAPCAACKLLRRRCAEECVFAPYFPADQPHKFANVHKVFGASNINKMLQELPVHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPIFEMDMGDSMW | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12548946 | 12551260 | - | MC03g0580 | Mch3g0858 | 683761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0858 | 181 | ProSiteProfiles | LOB domain profile. | 31 | 132 | IPR004883 | - | |
Mch3g0858 | 181 | Pfam | Lateral organ boundaries (LOB) domain | 32 | 129 | IPR004883 | - | |
Mch3g0858 | 181 | Coils | Coil | 111 | 138 | - | - | |
Mch3g0858 | 181 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 31 | 142 | - | - | |
Mch3g0858 | 181 | MobiDBLite | consensus disorder prediction | 146 | 169 | - | - | |
Mch3g0858 | 181 | MobiDBLite | consensus disorder prediction | 146 | 167 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0184 | Mch-Chr10:1118245 | Mch3g0858 | Mch-Chr3:12548946 | 1.47E-40 | dispersed | |
Mch3g0858 | Mch-Chr3:12548946 | Mch9g1433 | Mch-Chr9:16724604 | 7.79E-57 | dispersed | |
Mch3g0858 | Mch-Chr3:12548946 | Mch2g0739 | Mch-Chr2:5062145 | 1.10E-70 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43015 | PF03195 | LOB | 7.30E-44 | No_clan | Mch | TF |
Pathway information
