Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g0875 | ATGTTTTGCAGTTTGTTTGAGATGGAGAATTATCAAGCTGGTGATTTGACCGATGTGATTCGAGCGACCTCCGCCGCCGGAGGAGGCGGCGGTTACGGTGGCGCTGTCTCCTCGGGTTTTTCTCTCGCCGGCGACCGTCTCTGGCCGGATCTTCCCGCCGACGATTCCGTGAATTTCGGAGATCCATTATTGTTTCCGACCACTACCCAAGATCCATTTCTTCACCACTATACTTCCACCGTCAATTTTGCTTCTGACGGCGGCGGCGGTGGTGGGAGTTTGGCTGCGGTGGCGGAACGGCCGTGTAATATATTTTCACGTGTGTTGCAGATCTCTCCGAGCTCGAAAGTGGGTGGTGGTGTAATTAATACTACGAGTGAGACGGTGGCGGCTGCGGCGGGGAATTCGGCTGAAGCATCGGCTTGCGGCGGTGGCACCGCCTCCTCCGCCGCCGTAGTTTCGAACCCACTGGAAAACTCCGGGCTGCAGATCTCTCCTCCACGAAATCCGGCCATTAAAAGAAGGAAGAGCCAGGTGAAGAAGGTGGTGTGCATTCCGGCGCCGGCGCCGGCGAACAGCCGGTCAAGCAGCGGCGAAGTGGTTCCTTCTGATCTATGGGCATGGAGAAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGTTATTATCGGTGCAGCAGCTCCAAGGGCTGCTCTGCCCGAAAACAGGTGGAGCGCAGCCGCACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCAACTCAACGCAACGCTCTCGCTGGCTCCACTCGCTCCCACTCCTCAAGAAACCCCGCCCTTGCCCATAAAACAAGCCCGAAACACGAGCACAACAACGACAATCTAACCTCCCCATTAACGGGGGCCGTAAAGGGGGAGGAGGTGGAAGAAGACCAGACAACAGAGAAAGCAGCAACAACAGCACCAACAACAATAGATAATGATCATCAAGATCGGGAGGGAGATCGTCATCATCAAGAGTTCCCCTATGACCTAATTTTTGCAGATTTTGCCGATCAAATGAACGGGCACGATAATCGTTGTCGTCACGATCATCATCATCATGATCCAGCAGACCTTCTGAATAATGTGCTACTTTTCGGTAGCCAAGGAAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGAGAACAATAACAACCAGCAGATTGGGAATTATTCTTCAAATGCCAATAACTTGTTCAAAGAAGCCAATGGAGGCTAA | 1275 | 52.86 | MFCSLFEMENYQAGDLTDVIRATSAAGGGGGYGGAVSSGFSLAGDRLWPDLPADDSVNFGDPLLFPTTTQDPFLHHYTSTVNFASDGGGGGGSLAAVAERPCNIFSRVLQISPSSKVGGGVINTTSETVAAAAGNSAEASACGGGTASSAAVVSNPLENSGLQISPPRNPAIKRRKSQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHSSRNPALAHKTSPKHEHNNDNLTSPLTGAVKGEEVEEDQTTEKAATTAPTTIDNDHQDREGDRHHQEFPYDLIFADFADQMNGHDNRCRHDHHHHDPADLLNNVLLFGSQGSKDPFLELYDWAENNNNQQIGNYSSNANNLFKEANGG | 424 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12722382 | 12726325 | - | MC03g0595 | Mch3g0875 | 683778 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g0875 | 424 | ProSiteProfiles | WRKY domain profile. | 197 | 263 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0875 | 424 | SMART | WRKY_cls | 202 | 262 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0875 | 424 | Pfam | WRKY DNA -binding domain | 204 | 261 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0875 | 424 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 142 | 362 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
| Mch3g0875 | 424 | MobiDBLite | consensus disorder prediction | 256 | 339 | - | - | |
| Mch3g0875 | 424 | SUPERFAMILY | WRKY DNA-binding domain | 200 | 263 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0875 | 424 | FunFam | probable WRKY transcription factor 14 | 175 | 256 | - | - | |
| Mch3g0875 | 424 | Gene3D | WRKY domain | 175 | 256 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0875 | 424 | MobiDBLite | consensus disorder prediction | 256 | 284 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g0875 | Mch-Chr3:12722382 | Mch5g0423 | Mch-Chr5:2897503 | 1.18E-40 | dispersed | |
| Mch1g2119 | Mch-Chr1:20435556 | Mch3g0875 | Mch-Chr3:12722382 | 1.69E-65 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43017 | PF03106 | WRKY | 4.40E-25 | CL0274 | Mch | TF |
Pathway information