Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0937 ATGAGTACTTTTTCAGTGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGAGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTATATGCTTAAAATGTAGTGGTGTACACAGAAGCCTTGGAACACACATATCAAAGGTTTTGTCAGTAACATTGGATGAATGGTCTGAGGATGAGGTTGATGCAATGATTGAGGTTGGAGGAAATGCTTATGCTAATTCAATATATGAGGCTTTTATCCCTGATGGATATACAAAGCCTGGACCAAGTTCCAGCCATGAAGAGCGTTTAAAGTTTATTCGGCCTAAGTATGAACTTCAGGAATTTTTAAAACCTAGCTTGCGAATTGTTTCAAATAACTCCACAAAGAGCTCTGAGGAGCCAAGTTATTTTCAAGAGATTGCTGATAGCTTTCGGAGCTCGAATTCTTCAAAGAATATTTCACAAGAAGGCATGGTTGAATTTATGGGAGTACTGAAGGTCACTGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATCCTTTCATTGCCTTGACTATTGGACAACAGACGGCTAGAACAACAGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCGTGAATATGGGCCCTTAAGGCTGCAAGTGTTCGATCACGATGTTATTTTGGCTAACGACTCAATGGGTGAAGCAGAAATCGACCTCCAGCCATTGATAACATCAGCAACAGCATTTGGAGAGGCTGAAATGTTTGAGAATATGCAGATAGGAAAGTGGCTGAAGTCGGACGATAACGCCCTCATCGACAACAGTGCTGTCAACATCATCGACGGGAAGGTGATACAAGAGGTGTCACTCAAGCTCCAAAACGTAGAAACAGGTGAAGTGTACTTGGAACTAGAATGGATACCTCTTGATCAGTAG 1002 41.42 MSTFSVDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSVTLDEWSEDEVDAMIEVGGNAYANSIYEAFIPDGYTKPGPSSSHEERLKFIRPKYELQEFLKPSLRIVSNNSTKSSEEPSYFQEIADSFRSSNSSKNISQEGMVEFMGVLKVTVIKGTNLAVRDVKSSDPFIALTIGQQTARTTVIKSNLNPVWNEELMLSVPREYGPLRLQVFDHDVILANDSMGEAEIDLQPLITSATAFGEAEMFENMQIGKWLKSDDNALIDNSAVNIIDGKVIQEVSLKLQNVETGEVYLELEWIPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13250318 13253844 - MC03g0626 Mch3g0937 683840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0937 333 Gene3D C2 domain 174 333 IPR035892 -
Mch3g0937 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Mch3g0937 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Mch3g0937 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Mch3g0937 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Mch3g0937 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Mch3g0937 333 Pfam C2 domain 177 266 IPR000008 -
Mch3g0937 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Mch3g0937 333 SMART C2_3c 178 273 IPR000008 -
Mch3g0937 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Mch3g0937 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Mch3g0937 333 CDD ArfGap 18 124 - -
Mch3g0937 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Mch3g0937 333 CDD C2_ArfGAP 177 320 - -
Mch3g0937 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Mch3g0937 333 Gene3D Arf GTPase activating protein 4 136 IPR038508 -
Mch3g0937 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Mch3g0937 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0937 Mch-Chr3:13250318 Mch4g1592 Mch-Chr4:19168577 1.33E-108 dispersed
Mch11g1113 Mch-Chr11:7766489 Mch3g0937 Mch-Chr3:13250318 2.79E-25 transposed
Mch3g1559 Mch-Chr3:17623628 Mch3g0937 Mch-Chr3:13250318 2.19E-22 transposed
Mch5g1066 Mch-Chr5:8659508 Mch3g0937 Mch-Chr3:13250318 1.22E-19 transposed
Mch1g2092 Mch-Chr1:20297906 Mch3g0937 Mch-Chr3:13250318 6.70E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0937 K12486 - csv:101211569 564.303