Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0937 | ATGAGTACTTTTTCAGTGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGAGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTATATGCTTAAAATGTAGTGGTGTACACAGAAGCCTTGGAACACACATATCAAAGGTTTTGTCAGTAACATTGGATGAATGGTCTGAGGATGAGGTTGATGCAATGATTGAGGTTGGAGGAAATGCTTATGCTAATTCAATATATGAGGCTTTTATCCCTGATGGATATACAAAGCCTGGACCAAGTTCCAGCCATGAAGAGCGTTTAAAGTTTATTCGGCCTAAGTATGAACTTCAGGAATTTTTAAAACCTAGCTTGCGAATTGTTTCAAATAACTCCACAAAGAGCTCTGAGGAGCCAAGTTATTTTCAAGAGATTGCTGATAGCTTTCGGAGCTCGAATTCTTCAAAGAATATTTCACAAGAAGGCATGGTTGAATTTATGGGAGTACTGAAGGTCACTGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATCCTTTCATTGCCTTGACTATTGGACAACAGACGGCTAGAACAACAGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCGTGAATATGGGCCCTTAAGGCTGCAAGTGTTCGATCACGATGTTATTTTGGCTAACGACTCAATGGGTGAAGCAGAAATCGACCTCCAGCCATTGATAACATCAGCAACAGCATTTGGAGAGGCTGAAATGTTTGAGAATATGCAGATAGGAAAGTGGCTGAAGTCGGACGATAACGCCCTCATCGACAACAGTGCTGTCAACATCATCGACGGGAAGGTGATACAAGAGGTGTCACTCAAGCTCCAAAACGTAGAAACAGGTGAAGTGTACTTGGAACTAGAATGGATACCTCTTGATCAGTAG | 1002 | 41.42 | MSTFSVDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSVTLDEWSEDEVDAMIEVGGNAYANSIYEAFIPDGYTKPGPSSSHEERLKFIRPKYELQEFLKPSLRIVSNNSTKSSEEPSYFQEIADSFRSSNSSKNISQEGMVEFMGVLKVTVIKGTNLAVRDVKSSDPFIALTIGQQTARTTVIKSNLNPVWNEELMLSVPREYGPLRLQVFDHDVILANDSMGEAEIDLQPLITSATAFGEAEMFENMQIGKWLKSDDNALIDNSAVNIIDGKVIQEVSLKLQNVETGEVYLELEWIPLDQ | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13250318 | 13253844 | - | MC03g0626 | Mch3g0937 | 683840 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0937 | 333 | Gene3D | C2 domain | 174 | 333 | IPR035892 | - | |
Mch3g0937 | 333 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 132 | IPR037278 | - | |
Mch3g0937 | 333 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096(InterPro) | |
Mch3g0937 | 333 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096(InterPro) | |
Mch3g0937 | 333 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096(InterPro) | |
Mch3g0937 | 333 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 175 | 333 | - | - | |
Mch3g0937 | 333 | Pfam | C2 domain | 177 | 266 | IPR000008 | - | |
Mch3g0937 | 333 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 9 | 333 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Mch3g0937 | 333 | SMART | C2_3c | 178 | 273 | IPR000008 | - | |
Mch3g0937 | 333 | FunFam | Arf-GAP with dual PH domain-containing protein 1 | 10 | 138 | - | - | |
Mch3g0937 | 333 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096(InterPro) | |
Mch3g0937 | 333 | CDD | ArfGap | 18 | 124 | - | - | |
Mch3g0937 | 333 | ProSiteProfiles | C2 domain profile. | 159 | 274 | IPR000008 | - | |
Mch3g0937 | 333 | CDD | C2_ArfGAP | 177 | 320 | - | - | |
Mch3g0937 | 333 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 175 | 331 | IPR035892 | - | |
Mch3g0937 | 333 | Gene3D | Arf GTPase activating protein | 4 | 136 | IPR038508 | - | |
Mch3g0937 | 333 | SMART | arf_gap_3 | 15 | 137 | IPR001164 | GO:0005096(InterPro) | |
Mch3g0937 | 333 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 129 | IPR001164 | GO:0005096(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g0937 | Mch-Chr3:13250318 | Mch4g1592 | Mch-Chr4:19168577 | 1.33E-108 | dispersed | |
Mch11g1113 | Mch-Chr11:7766489 | Mch3g0937 | Mch-Chr3:13250318 | 2.79E-25 | transposed | |
Mch3g1559 | Mch-Chr3:17623628 | Mch3g0937 | Mch-Chr3:13250318 | 2.19E-22 | transposed | |
Mch5g1066 | Mch-Chr5:8659508 | Mch3g0937 | Mch-Chr3:13250318 | 1.22E-19 | transposed | |
Mch1g2092 | Mch-Chr1:20297906 | Mch3g0937 | Mch-Chr3:13250318 | 6.70E-170 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g0937 | K12486 | - | csv:101211569 | 564.303 |