Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0939 ATGGCTCTTGCCATTCATAGAGATTCCTTGAATAAGCAGATGGATACGAGTAAGTATGTGAGATACACGCCTGAGCAAGTGGACGCCTTGGAGAGGGTATACGCAGAATGCCCAAAGCCCAGTTCGTTGAGGAGGCAGCAGCTCATTCGGGAGTGTCCCATCCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAGAATCGTAGATGTCGTGAAAAGCAACGGAAGGAAGCCTCTCGTCTTCAAACAGTAAATAGGAAGCTGACTGCAATGAACAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCTCGCTTGGTCTACGACAACGGATACATGAAACAGCAACTGCATACTGCATCTGGAACAACCACGGACAATAGCTGTGAGTCCGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCTGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGGATTGTTGCTGTTTCCCGCAACTGCAATGGGGTAGCGGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCTACAAAGGTGGCCGAAATTCTTAAAGATCGTCTTTCATGGTTTCGTGACTGTCGTTGTGTCGACATATTAAGTGTAATCTCTACAGGAAATGGGGGGACTATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCAGCAGCACGTGACTTTTGGACTCTCCGATACACTACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCATTGACGTCGTCTACAGGTGGCCCTTCAGGACCTCCTCCATCCAGTTTCGTAAGAGCCGAAATGCTTCCAAGCGGGTATCTTATTCGAGCGTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGCTTGGAGTGTTCCTGAAGTTCTGAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTACGCTATGTACGCCAAATTTCTCAAGAGGCGAGTGGAGAAATTCAATTAGGCGGGGGTCGCCAACCAGCTGTTTTAAGGACCTTCAGTCAAAGGCTTTGCAGGGGTTTCAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCACTTATGGATAGCGATGGAGTAGAGGATGTAACAGTCGTTATTAATTCATCTCCAAACAAATTCCTCGGTTTGCAATACAACACGTCATTGTATCCTACTTTCGGAGGTGTGTTGTGTGCCAAGGCATCAATGTTGCTGCAGAATGTCCCCCCTGCTTTACTTGTTCGTTTCTTGCGGGAGCACCGTTCAGAATGGGCTGATTATGGAGTTGATGCGTACTCTGCCACATGTCTTAAAGCCAGTGCATATGCCGTTCCCTGTGCAAGACCCGGTGGCTTCTCGAGTGGCCAGGTCATCTTGCCACTCGCCCATACCGTTGAGAATGAGGAGTTCTTGGAGGTGGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTGGCTGGACGAGATATGTACTTATTGCAGTTGTGTAGTGGGATTGATGAAAATGCAGTTGGTTCATGTGCTCAGCTTGTATTTGCACCTATAGATGAATCGTTTGCTGATGATGCTCCCTTGCTACCATCTGGTTTTCGTGTCATACCATTGGAATCCAAAACAGATGCGCCTGCTGCAACTCGTACGTTGGATTTGGCGTCTACTCTAGAAGTCCGACCTGGCACTGCCCGTCCAGGCAGTGAAACTGACGTTACAAATTATAACCTCAGGTCAGTCTTGACAATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGCGTGGCTGCTATGGCAAGACAATACGTGCGAACCGTGGTGGGATCAGTTCAAAGGGTTGCCATGGCTATCTCCCCCTCGCAGCTTGGCTCCCAAATTGGTCCAAAAAGCCTTCCCGGCTCCCCGGAGGCTCTTACCTTGGCCCAGTGGATCTGCCGGAGCTACAGGATCCACACAGGGGCAGAGCTCTTTCAAGTTGAGTCCCAGTCTGATGATGCTATCTTGAAGCAGCTTTGGCACCATTCAGATACAATTTTATGCTGCTCTGTCAAAACTAATGCATCTCCCGTGTTCACATTTGCAAACCAAGCTGGACTCGACATGCTTGAAACTACCCTCGTCGCTCTTCAAGATATCATGCTCGACAAGATCCTTGACGATGCTGGTCGGAAAATACTGTGCTCCGAGTTCTCCAAGATAATGCAACAGGGATTCATATATCTTCCAGCTGGGATATGCGTCTCGAGCATGGGCAGGCCGGTGTCATATGAACAGGCAATTGCTTGGAAAGTTTTGAATGATGATGATGTTCATCATTGTCTAGCTTTCATGTTTGTAAACTGGTCTTTTATGTGA 2535 47.53 MALAIHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYDNGYMKQQLHTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDILSVISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRMTVAALRYVRQISQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGLQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSATCLKASAYAVPCARPGGFSSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALAGRDMYLLQLCSGIDENAVGSCAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTARPGSETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAISPSQLGSQIGPKSLPGSPEALTLAQWICRSYRIHTGAELFQVESQSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDDAGRKILCSEFSKIMQQGFIYLPAGICVSSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13279452 13287883 + MC03g0628 Mch3g0939 683842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0939 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Mch3g0939 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 844 IPR044830 GO:0003700(InterPro)
Mch3g0939 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Mch3g0939 844 Coils Coil 87 107 - -
Mch3g0939 844 SUPERFAMILY Bet v1-like 413 598 - -
Mch3g0939 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Mch3g0939 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Mch3g0939 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Mch3g0939 844 Gene3D - 185 374 IPR023393 -
Mch3g0939 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Mch3g0939 844 CDD START_ArGLABRA2_like 160 374 - -
Mch3g0939 844 Gene3D - 10 84 - -
Mch3g0939 844 SUPERFAMILY Bet v1-like 166 374 - -
Mch3g0939 844 Pfam MEKHLA domain 699 843 IPR013978 -
Mch3g0939 844 CDD bZIP 70 109 - -
Mch3g0939 844 MobiDBLite consensus disorder prediction 137 157 - -
Mch3g0939 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Mch3g0939 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Mch3g0939 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0351 Mch-Chr2:2628845 Mch3g0939 Mch-Chr3:13279452 0 dispersed
Mch3g0603 Mch-Chr3:10446956 Mch3g0939 Mch-Chr3:13279452 0 dispersed
Mch3g0939 Mch-Chr3:13279452 Mch9g0310 Mch-Chr9:2330285 0 dispersed
Mch1g2089 Mch-Chr1:20268520 Mch3g0939 Mch-Chr3:13279452 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43021 PF01852 START 2.30E-51 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0939 K09338 - csv:101211318 1600.49