Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0955 ATGTTAGGAGAGCTCGCCCGGGAATCAGACGGGGAGCTAAGCTACGAAGCGGCGGTTAATTCGAGTCAGAATTCTATGAGCAGTGAAAGTTGCAGCAGCTTTAGTCGCCTCTCGTTCGATGCCGCGATCGATTTCCCGACCTCGCGATCCTCGCCGGAGAGTCTCGATTTGAAGCCTCACCGATCGTCGGACTTTGCCTACTCCGCCATTCGTCGCCGGAAATCCAAGCTTACCTTCCGCGATTTTCGGCTCCTCCGCCGAATCGGCGCCGGTGACATTGGCACCGTCTACCTGTGCCGGCTGCGGAACTCGAGCGACGGCTGCTACGACGACGAAGACGATGATCCGTGTCTGTACGCCATGAAAGTGGTGGATAAGGAGGCGCTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGGAAAATATTGAAGATGCTGGACCATCCGTTTTTGCCTACTCTCTACGCTGAGTTTGAGGCGTCTCATTTCTCCTGTATCGTCATGGAGTTCTGTTCCGGCGGCGACTTGCATTCTCTCCGCCATAAGCAGCCGCACAAACGCTTCTCTCTCAACTCCGCGAGGTTTTATGCTGCTGAAGTTCTTGTTGCTTTAGAGTATCTTCACATGTTGGGAATAATCTACAGAGACCTAAAGCCGGAGAATGTCCTCGTCCGATCAGACGGCCACATCATGTTGTCGGACTTCGATCTCTCTCTCTGCTCCGACGCCATCCCGGCCGTTGAATCGCCGGAATCTTCCCCGAACCCGAAATTCCAAGACGCGGCGGCGTACCCCAGAACCAGCACGGCCGCCGCCGCCACTACCCCGTTCTCCTGCCTCTACAACCGGCTTTTCCGGTCGCGCAAGGTCCAGACCCTGACTCCCAACTGGCTCTTCGTCGCCGAACCCGTCTCCGCCCGGTCCTGCTCCTTCGTCGGCACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCCCACGGCAACGCCGTCGACTGGTGGGCCTTCGGGGTATTTCTCTACGAACTGATCTACGGCCGGACGCCGTTCGCGGCATCATCGAACGAGACGACGCTGCGTAACATCATAAAGAAGCCGTTGACGTTTCCGACCGCCGTATCGTCCGGCACGCTTGAGCACCACGCGCGGGACCTCATATCCGGGTTGCTAAACAAGGACCCGACCCGGAGACTCGGGTCAAAGCGCGGGTCCGCCGACATCAAGAAGCACCCTTTCTTCAAGAGCCTCAACTTCGCACTCATACGGTCCCTCGCTCCTCCAGCGGTTCCCGGCGTACGGCGGCGGAAGCCGGCGCCGGCGTCCAAACCCAAGGACAAGAAGGCACACTCGACGGGATTCGATTACTTCTGA 1380 58.41 MLGELARESDGELSYEAAVNSSQNSMSSESCSSFSRLSFDAAIDFPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCRLRNSSDGCYDDEDDDPCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPHKRFSLNSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESPESSPNPKFQDAAAYPRTSTAAAATTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTAVSSGTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLAPPAVPGVRRRKPAPASKPKDKKAHSTGFDYF 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13419054 13422186 + MC03g0644 Mch3g0955 683858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0955 459 Gene3D Transferase(Phosphotransferase) domain 1 173 240 - -
Mch3g0955 459 ProSiteProfiles Protein kinase domain profile. 82 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0955 459 MobiDBLite consensus disorder prediction 433 459 - -
Mch3g0955 459 Coils Coil 121 148 - -
Mch3g0955 459 FunFam protein kinase PINOID 173 241 - -
Mch3g0955 459 CDD STKc_phototropin_like 80 440 - -
Mch3g0955 459 SMART serkin_6 82 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0955 459 Gene3D Transferase(Phosphotransferase) domain 1 310 434 - -
Mch3g0955 459 SUPERFAMILY Protein kinase-like (PK-like) 61 433 IPR011009 -
Mch3g0955 459 FunFam serine/threonine-protein kinase D6PK-like 308 434 - -
Mch3g0955 459 Pfam Protein kinase domain 310 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0955 459 Pfam Protein kinase domain 83 240 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0955 459 FunFam protein kinase PINOID 2 80 172 - -
Mch3g0955 459 MobiDBLite consensus disorder prediction 1 30 - -
Mch3g0955 459 Gene3D Phosphorylase Kinase; domain 1 80 172 - -
Mch3g0955 459 MobiDBLite consensus disorder prediction 15 30 - -
Mch3g0955 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g0955 459 PANTHER FLIPPASE KINASE 1-RELATED 25 439 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0955 Mch-Chr3:13419054 Mch8g3098 Mch-Chr8:33399904 1.93E-130 dispersed
Mch3g0955 Mch-Chr3:13419054 Mch3g0725 Mch-Chr3:11538666 4.95E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77253 PF00069 Pkinase 1.70E-32 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0955 - - - 0.0