Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0963 GGGGAGAGGAGGGTCCTGAATTCTGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTACCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCGCAAGGTCATAGTGAGCAGGTCGCTGCATCTACCAATAGAGAGGTGGATGCCCAGATCCCAAACTACCCAAGTTTACCGCCGCAGCTAATCTGTCAACTTCACAACCTGACCATGCATGTACGACTTGATGATGCTGAGACAGATGAAGTATATGCCCAGATGACTTTGCAGCCCTTGAGTGCTGTAGGATTATTTATCTTTTCTGGCATTTTGATTACCGAGTTAGGCACTCCAAGTAGGCAGCCTACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACCCATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGATTTCTCCATGCAGCCCCCAGCACAAGAGCTAATTGCGAAGGACCTACATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGGCACCTTCTAACTACTGGATGGAGCATTTTTGTGAGTGCTAAACGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAAAATCAGTTACTCCTTGGAATCAGGCGTGCAAGTCGACCACAAACTGTGATGCCTTCATCAGTTTTGTCAAGTGATAGCATGCATTTAGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACCAATAGTCGGTTTACCATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGTCCAAATATGTGAAGGCAGTCTACCATACTCGCGTTTCTGTTGGTATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTAGATCCTGTAAGATGGCAAAATTCACATTGGCGATCGGTCAAGGTTGGTTGGGATGAGTCAACAGCAGGCGAGCGGCAGCCAAGAGTGTCCTTATGGGAAATTGAACCATTAACGACATTTCCAATGTATCCATCACCGTTTCCGCTTAGGCTGAAGCGTCCATGGCCTACTGCATTGCCTTCTTTCGGCATCAAGGACAGCGACTTCAGCATGAATTCTCCTTTCATGTGGATACGGGGAGATAATAGCGATCGTGGCATCCCATGTCTAAACTTCCAGGGAACTGGGGTCTCTCCATGGATGCAGCCAAGGCTTGATACTTCCATGATTGGTATGCAACCTGACATGTATCAAGCCATGGCTACTGCTGCTCTTCAGGAGATGAGGGCGATCGATTATTCCAAAATCGCACCTACATCCCTTCTACAATTCCAGCACCCGCAAGGTCTTCCTTGCCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGAATCAGTCCCAACCCCAACAGGCGTTTCTACAATCCATTCAAGAAAACCAGCAGCATTCTCAGTCTCAGGCTCAGGTGCAAACTCAGTCCCATCATCTGCAGCAACAATTGCAGCCCCAGCAGTCATTTAATAATCAACAACAGCAGCATCAACAGCAACAGCAACAGCAACCACGGCAGCCGCAGTCACAGCCGCAGCCGCTGGTTGATCATCAACCGATTCCTTGTACGATTCCTGCTATATCTCAGTTTGCTTCATGTTCCCAATCCCAGTCACCATCCCTGCAAACCGTCCCTTCCCTTTGCCAGCAACCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCAGGGTCGTTTGTCCAAGACGAATCGTCTCAGCTGCTTAACATCCAAAGAACAAGTTCAATAATTCCTTCAGCAGGCTGGCCATCAAAGAGAGCTGCTATTGATCCTCTCTCTACTGGAGCTTCTCAGTATTTTCTACCTCAAGTGGACAATTTGGGAACATCACAGAGTAGTATTTCTCAGAATACAGTTGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTATTGATCGAGATGAGGGCTCGGATCCACAGAACCATGTTTTATTTGGTGTGAATATAGACTCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTTGGCAATGATAGTGTTTCGACAACTCTACCTTTTTCTTCCAATTACATGAGCACTGCTGTTACCGATTTTTCTGTAAATCCAACGATGACATCCTCGAATTGCATCAATGAATCAGGTTTTCTGCAGTCTCATGAAAATGTAGGCCAAGTAAACCCATCGAACGGAACCTTTGTCAAGGTTCACAAATCAGGGTCCTACAGTAGGTCGCTAGATATATCAAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTAGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGGGATGGCCCGTGGCCGGAGTTTGTGAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCCGTGCCAATCCAGAGGCTCTCAAACAGCACCTGTGACGACTATGGTAGCCGACAGGACTCGAGAAATTTGATCTCGGGGATAACCTCTGTCGGGCCTCTAGACTACTGA 2706 47.01 GERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNREVDAQIPNYPSLPPQLICQLHNLTMHVRLDDAETDEVYAQMTLQPLSAVGLFIFSGILITELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTALPSFGIKDSDFSMNSPFMWIRGDNSDRGIPCLNFQGTGVSPWMQPRLDTSMIGMQPDMYQAMATAALQEMRAIDYSKIAPTSLLQFQHPQGLPCQSSTLMQPQMLNQSQPQQAFLQSIQENQQHSQSQAQVQTQSHHLQQQLQPQQSFNNQQQQHQQQQQQQPRQPQSQPQPLVDHQPIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDESSQLLNIQRTSSIIPSAGWPSKRAAIDPLSTGASQYFLPQVDNLGTSQSSISQNTVALPPFPGRECSIDRDEGSDPQNHVLFGVNIDSSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAVTDFSVNPTMTSSNCINESGFLQSHENVGQVNPSNGTFVKVHKSGSYSRSLDISKFNSYPELRSELARMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13472960 13478470 + MC03g0651 Mch3g0963 683866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0963 901 MobiDBLite consensus disorder prediction 488 550 - -
Mch3g0963 901 SMART B3_2 118 220 IPR003340 GO:0003677(InterPro)
Mch3g0963 901 MobiDBLite consensus disorder prediction 574 593 - -
Mch3g0963 901 CDD B3_DNA 117 218 IPR003340 GO:0003677(InterPro)
Mch3g0963 901 Gene3D - 116 219 IPR015300 -
Mch3g0963 901 SUPERFAMILY DNA-binding pseudobarrel domain 103 247 IPR015300 -
Mch3g0963 901 FunFam Auxin response factor 282 354 - -
Mch3g0963 901 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677(InterPro)
Mch3g0963 901 Gene3D - 765 857 - -
Mch3g0963 901 FunFam Auxin response factor 763 857 - -
Mch3g0963 901 FunFam Auxin response factor 116 220 - -
Mch3g0963 901 Pfam AUX/IAA family 758 857 IPR033389 -
Mch3g0963 901 ProSiteProfiles PB1 domain profile. 768 852 IPR053793 -
Mch3g0963 901 MobiDBLite consensus disorder prediction 488 546 - -
Mch3g0963 901 Pfam Auxin response factor 244 326 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch3g0963 901 Gene3D - 282 354 - -
Mch3g0963 901 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677(InterPro)
Mch3g0963 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 859 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch3g0963 901 SUPERFAMILY CAD & PB1 domains 758 843 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0963 Mch-Chr3:13472960 Mch4g1648 Mch-Chr4:19671306 2.29E-298 dispersed
Mch2g0367 Mch-Chr2:2735698 Mch3g0963 Mch-Chr3:13472960 2.56E-111 transposed
Mch1g2064 Mch-Chr1:20009579 Mch3g0963 Mch-Chr3:13472960 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43023 PF02309 AUX_IAA 9.90E-08 CL0072 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0963 K14486 - csv:101211705 1528.46