Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0968 ATGGACGGCGGCGGTGGGAGATTGAAGGCATCGAGTTCGAGCAATGGTGGAAGAACACGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGCGAGGGCAACTTCGCCAAGGTCAAGTTTGCTCGGAACCCGGAGACCGGCGAGAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCGGTCAGATTAAACGAGAGATATCAACAATGAAATTAATTAGACATCCAAACGTCATCCGCATGATTGAGGTGATGGCTAGCAAGACGAAAATATACATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGACAAAATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAACAGCTTATTAATGCGGTAGATTATTGTCATAGCAGAGGTGTCTTTCACAGAGACCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGGGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTCCACACAACATGTGGTACACCAAATTATGTTGCTCCAGAGGTGATCAACAACAAAGGCTACGACGGAGCAAAGGCAGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATTTGCCTTTCGAAGATTCCAACCTGGTTGCACTGTATAAGAAGGCAATTTCATGTTTATTTTATCACCAGATACACAAGGCTGAGTTCACTTGTCCACCGTGGTTCTCTACAAATGCAAAGAAACTAATCAAAAGAATTTTGGATCCCAACCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGATATAAGCCACCCACTTTTGAACAAGCTGATATTACTCTTGATGATGTAGATGCTATCTTCAATGAAACGGGGGATTCTGGTAGTCTTGTCGTGGAAAGGAAAGAGGAAGGACGACCTGCTGCTCCTCTTACGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTCGTTAAGAGGGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCCAAAATTGAGGAAACTGCAGCACCATTGGGTTTTGGTGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGCGAAAAAACAGGTCGTAAAGGCCACTTATCTGTTGCCACGGAGATTTATGAGGTGGCTCCGTCACTGTACATGGTTGAAGTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACCGGGCTGAAAGACATTGTCTGGAGACATGAGGAGGATGCAGATGAAGAAGATAGCAGTGGTTCG 1407 43.35 MDGGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNPETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMIEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKAISCLFYHQIHKAEFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADITLDDVDAIFNETGDSGSLVVERKEEGRPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVEVRKAGGDTLEFHKFYKNLKTGLKDIVWRHEEDADEEDSSGS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13528969 13534879 - MC03g0656 Mch3g0968 683871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0968 469 Gene3D Kinase associated domain 1, KA1 336 456 - -
Mch3g0968 469 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Mch3g0968 469 SMART serkin_6 24 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0968 469 Pfam NAF domain 333 393 IPR004041 GO:0007165(InterPro)
Mch3g0968 469 MobiDBLite consensus disorder prediction 1 23 - -
Mch3g0968 469 Gene3D Transferase(Phosphotransferase) domain 1 17 335 - -
Mch3g0968 469 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 444 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch3g0968 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g0968 469 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Mch3g0968 469 Pfam Protein kinase domain 24 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0968 469 CDD STKc_SnRK3 23 287 - -
Mch3g0968 469 ProSiteProfiles Protein kinase domain profile. 24 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0968 469 FunFam Non-specific serine/threonine protein kinase 17 329 - -
Mch3g0968 469 FunFam Non-specific serine/threonine protein kinase 330 456 - -
Mch3g0968 469 CDD CIPK_C 337 452 - -
Mch3g0968 469 SUPERFAMILY Protein kinase-like (PK-like) 21 298 IPR011009 -
Mch3g0968 469 ProSiteProfiles NAF domain profile. 331 355 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0042 Mch-Chr2:330998 Mch3g0968 Mch-Chr3:13528969 4.52E-218 dispersed
Mch3g0968 Mch-Chr3:13528969 Mch5g0519 Mch-Chr5:3443746 4.13E-229 dispersed
Mch7g1274 Mch-Chr7:16206961 Mch3g0968 Mch-Chr3:13528969 3.65E-37 dispersed
Mch5g1876 Mch-Chr5:18870570 Mch3g0968 Mch-Chr3:13528969 3.36E-42 transposed
Mch1g2058 Mch-Chr1:19954912 Mch3g0968 Mch-Chr3:13528969 1.10E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77254 PF00069 Pkinase 1.70E-75 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0968 - - - 0.0