Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1003 CTTGTTCTTCCAATGGCGGCCTCAACAATGGCTCTCTCCTCCCCCTCACTCGCCGGAAAGGCAGTGAAGCTCACACCCTCCTCCCCCGAGCTTCTCGGCAATGGGAGAGTTAGCATGAGGAAATCTGTCTCCAAGTCCGTTTCTTCCGGAAGTCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGCCCATTCTCCGGCGAGCCTCCCTCCTACCTGACTGGAGAGTTTCCCGGCGACTATGGCTGGGACACTGCCGGACTTTCTGCAGACCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAAGTCATCCACTCAAGGTGGGCCATGCTTGGGGCATTGGGCTGCGTCTTCCCTGAGCTTTTGTCCCGAAACGGCGTGAAGTTTGGAGAAGCGGTGTGGTTCAAGGCGGGATCTCAGATCTTCAGTGAGGGCGGGCTCGACTACTTGGGAAACCCGAGCTTGATCCACGCACAGAGCATTCTAGCCATTTGGGCGACACAGGTGGTTCTCATGGGGGCTGTCGAGGGATACCGTATTGCCGGTGGCCCACTCGGCGAGGTTACTGACCCGATTTACCCGGGTGGGAGCTTTGACCCATTGGGGCTTGCAGATGACCCGGAAGCTTTTGCAGAGCTAAAGGTGAAGGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTCACTGGAAAGGGTCCGTTGGAGAATCTTGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACCAACTTTGTTCCTGGGAAATGA 810 55.8 LVLPMAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13775686 13777444 - MC03g0687 Mch3g1003 683906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1003 269 Gene3D Chlorophyll a/b binding protein domain 60 262 - -
Mch3g1003 269 SUPERFAMILY Chlorophyll a-b binding protein 52 266 - -
Mch3g1003 269 Pfam Chlorophyll A-B binding protein 69 236 IPR022796 -
Mch3g1003 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 8 269 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch3g1003 269 FunFam Chlorophyll a-b binding protein, chloroplastic 60 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2004 Mch-Chr1:19604656 Mch3g1003 Mch-Chr3:13775686 1.76E-190 dispersed
Mch2g0724 Mch-Chr2:4940071 Mch3g1003 Mch-Chr3:13775686 3.54E-184 dispersed
Mch3g1003 Mch-Chr3:13775686 Mch3g1006 Mch-Chr3:13782717 3.65E-189 dispersed
Mch3g1003 Mch-Chr3:13775686 Mch3g1005 Mch-Chr3:13779783 7.68E-191 proximal
Mch4g0334 Mch-Chr4:2087671 Mch3g1003 Mch-Chr3:13775686 4.60E-152 transposed
Mch8g2102 Mch-Chr8:24052749 Mch3g1003 Mch-Chr3:13775686 7.15E-153 transposed
Mch10g1131 Mch-Chr10:8486767 Mch3g1003 Mch-Chr3:13775686 3.46E-121 transposed
Mch1g2002 Mch-Chr1:19602157 Mch3g1003 Mch-Chr3:13775686 5.99E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1003 K08912 - csv:101211276 512.301