Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1006 ATGGCTCTCTCCTCTCCGTCACTCGCCGGAAAGGCGGTGAAGCTCACGCCCTCTTCCCCCGAGCTTCTCGGCAATGGGAGAGTCAGCATGAGAAAATTTGTCTCCAAGTCCGTTTCTTCTGGGAGCCCATGGTACGGACCCGACCGTGTCAAATATTTGGGCCCATTCTCCGGTGAGCCTCCATCCTACCTCACCGGAGAATTCCCTGGAGACTATGGTTGGGATACCGCCGGACTTTCTGCAGATCCCGAGACCTTTGCCAAGAATCGTGAGCTCGAAGTCATACACTCCAGGTGGGCTATGCTTGGGGCCTTGGGCTGCGTGTTCCCAGAGCTTCTATCCCGCAACGGTGTGAAATTCGGGGAAGCGGTATGGTTCAAGGCTGGATCTCAGATCTTCAATGAAGGTGGGCTCGACTACTTGGGCAACCCCAGCTTGATCCACGCACAGAGCATTTTAGCCATTTGGGCTTCCCAAGTAGTTCTAATGGGAGCCGTCGAGGGATACCGTATTGCCGGTGGTCCACTCGGCGAGGTGACCGACCCGATCTACCCGGGTGGGAGCTTTGACCCGTTGGGACTTGCAGATGACCCGGAAGCATTTGCAGAGCTGAAGGTGAAGGAGCTTAAGAATGGAAGGTTGGCGATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCTATTGTCACCGGAAAAGGTCCATTGGAGAACCTTGCTGACCATTTGGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCCACCGACTTTGTTCCTGGAAAATAA 783 54.41 MALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATDFVPGK 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13782717 13784436 + MC03g_new0318 Mch3g1006 683909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1006 260 FunFam Chlorophyll a-b binding protein, chloroplastic 51 253 - -
Mch3g1006 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 260 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch3g1006 260 Pfam Chlorophyll A-B binding protein 60 227 IPR022796 -
Mch3g1006 260 SUPERFAMILY Chlorophyll a-b binding protein 43 257 - -
Mch3g1006 260 Gene3D Chlorophyll a/b binding protein domain 51 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1003 Mch-Chr3:13775686 Mch3g1006 Mch-Chr3:13782717 3.65E-189 dispersed
Mch3g1006 Mch-Chr3:13782717 Mch8g2102 Mch-Chr8:24052749 9.10E-153 dispersed
Mch3g1005 Mch-Chr3:13779783 Mch3g1006 Mch-Chr3:13782717 1.08E-190 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1006 K08912 - csv:101211276 514.612