Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g1015 | ATGCCATGTTCTTCTTCCAGCTGCTTCTGCACGAAGCACTTCTTCAAGCGCTTCTTCACCCATGAGGAGTTCCAAATGGCGGACGGCGTTCTCCACACTACTTTCTTTGCCCCTCATCTCTTGCCCTCCCTCGGCGCCACCATCAATCAAACAACCAAGCTCCGTAAACGCATCGTTTCCCCTTTCGACCCCCGCTATCGAGCTTGGGAGATGTGGCTGGTGGTTCTGGTGATCTATTCAGCATGGATTTGTCCATTTGAGTTTGCGTTTCTTCCTTACAAGCAAAATGCTCTCTTCATCTTCGACCACATCGTCAATGCCTTCTTCGCCGTCGATATCCTTTTAACTTTCTTCGTCGCCTATCTCGATACCCACTCCTATCTTCTCGTCGACAACCCCAAAAGAATTGCACTCAGGTATTTATCTACGTGGTTCGTTTTCGACGTGTGCTCGACCGCGCCGTTGCAGTCGATAAGTTTCTTGTTCACGAACCGGAGCGGGGAAGTTGGGTTCAAGCTTCTGAACATGCTCCGGCTATGGCGCCTCCGACGGGTCAGCTCTCTCTTCGCAAGGCTAGAGAAGGACATCCGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTGCACTGTGCAGGGTGCTTCAATTTCGTAATAGCAGACAAATATCCAGACCCAAAAAGGACATGGATTGGTGCAGTGAACCCAAATTTTAAGAACGACAGCCGATGGAACCTCTACATAACTTCAATTTACTGGTCCATCACCACCTTAACCACCACTGGCTATGGCGATCTCCACGCTGAGAACCCTAGAGAGATGCTCTTCGACATCTTCTATATGCTCTTCAACTTAGGTTTGACTTCGTATCTTATCGGAAACATGACCAATCTCGTCGTCCACTGGACTAGCCGCACACGAAACTTCAGGGATTCGGTTCGAGCTGCAACAGAGTTTGCATCGAGAAACCAGCTACCGGGTCGGATTCAAGATCAGATGTTGTCACACATATGTCTGAAGTTCAAAACCGAGGGGCTGAAACAACAAGACACCTTGAACGACCTTCCAAAAGCCATTAGAGCTTCCATAGCTCACTATCTCTTCTACCCCATTCTTCTTCAGGTCTATCTTTTTCAAGGAGTTTCTCATGACTTTCTTTTCCAACTGGTATCAGATGTGGAGGCTGAGTACTTTCCACCAAAGGAAGATGTTATACTCCAAAATGAGGCTCAAACTGATCTTTATGTATTGGTCTCAGGCAGTGTGGATCTAATATCCAATATTGATGGGCATGATCGAGTTATGGGACAAGCAACAGCAGGAGACATGTTTGGAGAGTTGGGAGTGTTGTGTCAAAGGCCACAGCCTTTCACAGTTCGAACCACAAAGCTTTCACAAATTTTAAGGCTCAAGAGAACTTCTTTGTTGTACATAATACAATCAAATACAGAAGATGGCAACTTTATAATGAACAACTTTTTCATGAAAATGAAGCAATATGAAAGAATGGGCAATATATGCAGTAGTTTAGATGAATATAGAATAGAGTTTGATGAGCTAGAAGGAGCTGAAAGGGACATTTTTCCTCAAAACAAACAAGCAAGATCAAATGGGGGTCCTTCAGATTTTGTAGTCTCCTCCTTAGAAAATTTGTCAACCGCGACGGCCTCTTGCTCGAGTGTCGTCTCTAGACAAACCAAGAGAAGGGTTACCATACACATGCTGCCTCGACATGGAACCGAAGAAGTTAAAAGTCAATATGGAAAGTTAATATTTATCCCTGATTCAATAGAAGAGCTCCGCAAGATGGCGAGTGAAAAGTTTGGAGGAGAAATGGCTACAAAAGTGTTGAGTGCAGATAATGCGGAAATTGATGATATAAGTGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATGATATTGAAAAT | 1956 | 44.38 | MPCSSSSCFCTKHFFKRFFTHEEFQMADGVLHTTFFAPHLLPSLGATINQTTKLRKRIVSPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIFDHIVNAFFAVDILLTFFVAYLDTHSYLLVDNPKRIALRYLSTWFVFDVCSTAPLQSISFLFTNRSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFVIADKYPDPKRTWIGAVNPNFKNDSRWNLYITSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPGRIQDQMLSHICLKFKTEGLKQQDTLNDLPKAIRASIAHYLFYPILLQVYLFQGVSHDFLFQLVSDVEAEYFPPKEDVILQNEAQTDLYVLVSGSVDLISNIDGHDRVMGQATAGDMFGELGVLCQRPQPFTVRTTKLSQILRLKRTSLLYIIQSNTEDGNFIMNNFFMKMKQYERMGNICSSLDEYRIEFDELEGAERDIFPQNKQARSNGGPSDFVVSSLENLSTATASCSSVVSRQTKRRVTIHMLPRHGTEEVKSQYGKLIFIPDSIEELRKMASEKFGGEMATKVLSADNAEIDDISVIRDGDHLFLLYNDIEN | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 13843360 | 13848619 | - | MC03g0697 | Mch3g1015 | 683918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g1015 | 652 | Gene3D | Jelly Rolls | 377 | 512 | IPR014710 | - | |
| Mch3g1015 | 652 | Pfam | Cyclic nucleotide-binding domain | 403 | 489 | IPR000595 | - | |
| Mch3g1015 | 652 | Gene3D | - | 67 | 307 | - | - | |
| Mch3g1015 | 652 | SMART | cnmp_10 | 384 | 501 | IPR000595 | - | |
| Mch3g1015 | 652 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 384 | 503 | IPR000595 | - | |
| Mch3g1015 | 652 | FunFam | Potassium channel KAT2 | 372 | 508 | - | - | |
| Mch3g1015 | 652 | SUPERFAMILY | Voltage-gated potassium channels | 61 | 306 | - | - | |
| Mch3g1015 | 652 | PANTHER | POTASSIUM CHANNEL AKT1 | 31 | 508 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Mch3g1015 | 652 | CDD | CAP_ED | 384 | 497 | IPR000595 | - | |
| Mch3g1015 | 652 | ProSiteProfiles | KHA domain profile. | 576 | 652 | IPR021789 | - | |
| Mch3g1015 | 652 | Gene3D | Helix hairpin bin | 308 | 374 | - | - | |
| Mch3g1015 | 652 | Pfam | KHA, dimerisation domain of potassium ion channel | 575 | 645 | IPR021789 | - | |
| Mch3g1015 | 652 | SUPERFAMILY | cAMP-binding domain-like | 311 | 500 | IPR018490 | - | |
| Mch3g1015 | 652 | Pfam | Ion transport protein | 66 | 313 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch3g1015 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 254 | 271 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch3g1015 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 113 | 122 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch3g1015 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 298 | 307 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch3g1015 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 79 | 86 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch3g1015 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 280 | 291 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch3g1015 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 102 | 112 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch3g1015 | 652 | FunFam | Potassium channel KAT3 | 68 | 308 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g0545 | Mch-Chr10:3574706 | Mch3g1015 | Mch-Chr3:13843360 | 2.80E-172 | dispersed | |
| Mch11g0596 | Mch-Chr11:3822867 | Mch3g1015 | Mch-Chr3:13843360 | 2.49E-173 | dispersed | |
| Mch3g1015 | Mch-Chr3:13843360 | Mch6g0758 | Mch-Chr6:5208408 | 7.12E-205 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch3g1015 | K21867 | - | csv:101215858 | 1008.44 |