Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1027 ATGGAGAAGATTCGAAGCGGTGATCGGAGAATGGCCGCCTTCTCCTCCTCGGCCGACAGCACTCGTCCCAGCCACTCCACCAGCACCGGCGATGGAGCTGCGGCTCTTGCCCAGTACAATGCCGATGCTGGCCTTATGAGCAAATTTGAGCAATCCGACGCCTCTGGTGAGTCCTTCAACTACTCGAGATCGGTTCTTGAGGCTTCTCATCAATCCGTACCCGAAGAGCAAATAACTTCCTATCTCGCTCGGATTCAGAGGGGTGGCCTGGTCCAACCGTTTGGTTGTTTGATTGCTATTGAGGAGTCTGGGTTTAAGATTGTGAGCTATAGTGAGAATTGTTTTGAACTGTTGGGGCTGGAAAATGAATCCGAGTCGTCACAGGGTAAGGGTTTGATCGGTGTTGATATGAGAACTCTGTTTACGGCTCCCTCCGGTGCTTCGTTGGCAAAGGCGGCGTCGGCGAGGGAGATTTCGCTGTCGAATCCTGTTTGGGTCTACTCTAGGACAAACCAGAAGCCGTTTTATGCTATACTGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCAAGGTCTATTGATCCTGCATTGTCGCTTGCTGGGGCCGTGCATTCGCAGAAGCTTGCGGTTCGAGCGATTTCGAGGCTGCAGGCTCTACCTGGTGGTGATATTGGTGTGCTATGTGACACGGTTGTGGAAGATGTCCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAACTCAGAAGGTCCGACTTAGAGCCATATCTTGGTCTGCATTATCCTGCCATAGACATCCCTCAAGCTGCTCGTTTTCTGTTCAAGCAGAATCGAGTGAGGATGATTTGCAATTGCCGCGCAAAGCCTGTGCAGGTCATTCAAAGCGAGGAGCTCAAGCAGCCTCTGTGTCTGGTGAATTCAACTCTTCGAGCACCACATAATTGTCATTTGCAGTACATGTCAAATATGGGCTCCATAGCCTCATTAGCCATGGCAGTAGTCATTAACAGTGATAACTCGCCAACAAGGTTATGGGGCTTGGTCGTGTGCCATCATACTTCTCCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCCACATGGAGCTTCAATTGGCAGTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTCCGAGGCTCCCCACATGCATTGCTGACTAAATCTCCAAGTATAAAGGATCTCGTGAAGTGTGATGGTGCCGCATTGCTCTATAACGGGGCATGTTGTTTAGTAGGTGTAACTCCAACCGAAGCACAAGTCAAAGATATTGCAGAGTGGATACACAAGAACTATGAGGATTCCACGGGGCTGAGCACGGATAGTTTGGCTGATGCTGGGTACCCTGAAGCTGCTTTATTAGGCGATGCAGTGTGTGGCATGGCAGCTGCAAAAATCAGTTCAAAGGATTTTTTATTCTGGTTCAGGTCCCATGCTGCAAAGGAAGTCCAATGGGGAGGAGCCAAACATCACCCAGATGATAAGGATGATGGAGGAAGAATGCACCCAAGATCATCATTTAAAGCGTTTCTTGAGGTTGTAAAGAGTAAAAGTATGTCTTGGGAAGTTCAAGAAATCAATGCCATTCACTCATTGCAGATTATTATGAGGGAATCTTTTTTGAGTACTAGGGACAGTGATTCAAAGGCAGAACGTTCTGTCCAGCACCATGATACTGAGATTTCTGAACTCAGTTCAGTAGCTTGCGAAATGGTTAGGTTGATCGAAACAGCAACTGTTCCAATTTTTGGGGTTGATTCAACTGGTGTGATCAATGGATGGAATGATAAAATTTCTGAACTTTTGGGATTACAACCTAGTGAAGCTTTGGGGAAACTTCTGGTTAATGAAATTGTTCACGAAGATTCCCGTGGAACTGTTCAAGATTTACTTTCCCATGCTCTGGAAGGTAAGGAAGACAAAAATGTGGAGATAAAATTGAGAAGTTTCAGAACTGACAAAGAAAACACTACTGTGTATATTGTGGTTAATGCTTGCACAAGTAGGGATTACACAAACAAAATTGTTGGGGTTTGCTTTGTTGGGCAAGATGTTACATCCGAGAAATCCATGCTGGATAAATTTCTTCGTCTGCGGGGAGACTATGAGACTATTATTCAAAGTCTGAATCCATTGATTCCACCAATATTTGTTTCAGACAAGGATGGCTACTGCTGTGAATGGACTGCAGCCATGGAAAAACTTACTGGTTTGAGGAGAGAAGAAGTTGTAGGAAAAATGTTAGCTGGGGAGATCTTTGGGAATTTCTGCAGGTTGAAAGGTTTAGATACCCTCACTAGGTTTATGATCCTATTATATAAAGGTATTGGTGGTGAAGAAACCGAGAAGTGTCCATTAGGGTTTTTCAATAAGAATGGTAAGTTTTCAGAGGTGCTTGTAACCTCAAACAAGAGAACTGATGCAGAAGGAAATATCATTGGTTGTATCTGCTTCCTGCAAATTGCTGGGCCCAACTTGGAACAGGACTCTAAAGGAATTTGGGCGAGGGACAAGGAAGGCGTTTTGCAGCTCAAGGAGTTGACCTACATAAAGCAGGAGATGAAGAATCCTTTAAATGGCCTTAGATTTACTCATGAACTCCTTGTAAAATCTGGGGTTACTGAAAACCAGAAACTCTTCCTTGAAACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGATTTCAGAAGTTTGGAAGGAGGCCATGTAGAGATAAGCAGAGAAGAATTTCTCCTCGGGAGTGTTTTGGATGCGATTATCTGTCAAATAATGATGGTTGTCCGAGAGAAGAACATACAACTTTTTCATGAAATTCCACAAGAAATCAAAATGTTATCTCTTTGTGGCGATCAAATTAAGCTTCAGCTGGTTTTGTCAGATTTCTTACTTAACATAGTACGCCACACGCCTGTTCCGGACGGTTGGGTTGAAATCCACATTTCGTCTGGCTTGAAGCTTATCCAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGATTTAATCCAAGATATGGTTGGAGGAGGACAGCAGTGGACCTCGCAGGAAGGCCTTGCGTTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAGCGTTCTGTATGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATATCGAACTCAAGTTAAGGTGCCCGAGGGGGTCGATGGAAGCTACTACAAGCCAAAGGACTTGA 3378 44.67 MEKIRSGDRRMAAFSSSADSTRPSHSTSTGDGAAALAQYNADAGLMSKFEQSDASGESFNYSRSVLEASHQSVPEEQITSYLARIQRGGLVQPFGCLIAIEESGFKIVSYSENCFELLGLENESESSQGKGLIGVDMRTLFTAPSGASLAKAASAREISLSNPVWVYSRTNQKPFYAILHRIDVGIVIDLEPARSIDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSELRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICNCRAKPVQVIQSEELKQPLCLVNSTLRAPHNCHLQYMSNMGSIASLAMAVVINSDNSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLHMELQLAVQLTEKKVLKTQTLLCDMLLRGSPHALLTKSPSIKDLVKCDGAALLYNGACCLVGVTPTEAQVKDIAEWIHKNYEDSTGLSTDSLADAGYPEAALLGDAVCGMAAAKISSKDFLFWFRSHAAKEVQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVVKSKSMSWEVQEINAIHSLQIIMRESFLSTRDSDSKAERSVQHHDTEISELSSVACEMVRLIETATVPIFGVDSTGVINGWNDKISELLGLQPSEALGKLLVNEIVHEDSRGTVQDLLSHALEGKEDKNVEIKLRSFRTDKENTTVYIVVNACTSRDYTNKIVGVCFVGQDVTSEKSMLDKFLRLRGDYETIIQSLNPLIPPIFVSDKDGYCCEWTAAMEKLTGLRREEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYKGIGGEETEKCPLGFFNKNGKFSEVLVTSNKRTDAEGNIIGCICFLQIAGPNLEQDSKGIWARDKEGVLQLKELTYIKQEMKNPLNGLRFTHELLVKSGVTENQKLFLETSDACERQIMTIIEDMDFRSLEGGHVEISREEFLLGSVLDAIICQIMMVVREKNIQLFHEIPQEIKMLSLCGDQIKLQLVLSDFLLNIVRHTPVPDGWVEIHISSGLKLIQDGNEHIHLQIRMSHPGQGLPPDLIQDMVGGGQQWTSQEGLALNLSRRLLNKLNGSVLYVREQTKCYFLIDIELKLRCPRGSMEATTSQRT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13934016 13939776 + MC03g0709 Mch3g1027 683930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1027 1125 Gene3D PAS domain 756 864 - -
Mch3g1027 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 194 IPR035965 -
Mch3g1027 1125 MobiDBLite consensus disorder prediction 1 33 - -
Mch3g1027 1125 PANTHER OS08G0260000 PROTEIN 16 988 - -
Mch3g1027 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 387 IPR016132 -
Mch3g1027 1125 MobiDBLite consensus disorder prediction 13 33 - -
Mch3g1027 1125 SUPERFAMILY GAF domain-like 208 394 - -
Mch3g1027 1125 CDD HATPase_Phy-like 996 1108 IPR044767 -
Mch3g1027 1125 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 631 646 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 705 722 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 612 628 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 725 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 615 723 IPR035965 -
Mch3g1027 1125 ProSiteProfiles PAS repeat profile. 609 680 IPR000014 -
Mch3g1027 1125 Gene3D - 402 575 IPR043150 -
Mch3g1027 1125 Pfam PAS fold 81 193 IPR013654 GO:0006355(InterPro)
Mch3g1027 1125 SMART pas_2 611 678 IPR000014 -
Mch3g1027 1125 SMART pas_2 745 812 IPR000014 -
Mch3g1027 1125 Pfam PAS fold 612 727 IPR013767 GO:0006355(InterPro)
Mch3g1027 1125 Pfam PAS fold 743 862 IPR013767 GO:0006355(InterPro)
Mch3g1027 1125 ProSiteProfiles Histidine kinase domain profile. 891 1110 IPR005467 -
Mch3g1027 1125 Pfam Phytochrome region 410 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PIRSF Phytochrome_conventional 11 1117 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch3g1027 1125 Pfam His Kinase A (phospho-acceptor) domain 887 947 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch3g1027 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 757 861 IPR035965 -
Mch3g1027 1125 FunFam Phytochrome 605 737 - -
Mch3g1027 1125 SMART gaf_1 226 407 IPR003018 GO:0005515(InterPro)
Mch3g1027 1125 SMART HKATPase_4 996 1108 IPR003594 -
Mch3g1027 1125 Gene3D PAS domain 84 329 - -
Mch3g1027 1125 Pfam GAF domain 227 394 IPR003018 GO:0005515(InterPro)
Mch3g1027 1125 Gene3D PAS domain 610 732 - -
Mch3g1027 1125 ProSiteProfiles PAC domain profile. 683 739 IPR000700 -
Mch3g1027 1125 Gene3D - 207 558 IPR029016 -
Mch3g1027 1125 Gene3D - 926 1101 IPR036890 -
Mch3g1027 1125 CDD HisKA 889 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch3g1027 1125 NCBIfam PAS domain S-box protein 616 732 IPR000014 -
Mch3g1027 1125 CDD PAS 754 862 IPR000014 -
Mch3g1027 1125 SUPERFAMILY GAF domain-like 405 585 - -
Mch3g1027 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Mch3g1027 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 996 1099 IPR003594 -
Mch3g1027 1125 CDD PAS 620 727 IPR000014 -
Mch3g1027 1125 ProSiteProfiles PAS repeat profile. 743 795 IPR000014 -
Mch3g1027 1125 FunFam Phytochrome 402 532 - -
Mch3g1027 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1099 IPR036890 -
Mch3g1027 1125 SMART HisKA_10 884 948 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1027 Mch-Chr3:13934016 Mch5g0771 Mch-Chr5:5251230 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1027 K12123 - csv:101214900 1848.17