Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1027 ATGGAGAAGATTCGAAGCGGTGATCGGAGAATGGCCGCCTTCTCCTCCTCGGCCGACAGCACTCGTCCCAGCCACTCCACCAGCACCGGCGATGGAGCTGCGGCTCTTGCCCAGTACAATGCCGATGCTGGCCTTATGAGCAAATTTGAGCAATCCGACGCCTCTGGTGAGTCCTTCAACTACTCGAGATCGGTTCTTGAGGCTTCTCATCAATCCGTACCCGAAGAGCAAATAACTTCCTATCTCGCTCGGATTCAGAGGGGTGGCCTGGTCCAACCGTTTGGTTGTTTGATTGCTATTGAGGAGTCTGGGTTTAAGATTGTGAGCTATAGTGAGAATTGTTTTGAACTGTTGGGGCTGGAAAATGAATCCGAGTCGTCACAGGGTAAGGGTTTGATCGGTGTTGATATGAGAACTCTGTTTACGGCTCCCTCCGGTGCTTCGTTGGCAAAGGCGGCGTCGGCGAGGGAGATTTCGCTGTCGAATCCTGTTTGGGTCTACTCTAGGACAAACCAGAAGCCGTTTTATGCTATACTGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCAAGGTCTATTGATCCTGCATTGTCGCTTGCTGGGGCCGTGCATTCGCAGAAGCTTGCGGTTCGAGCGATTTCGAGGCTGCAGGCTCTACCTGGTGGTGATATTGGTGTGCTATGTGACACGGTTGTGGAAGATGTCCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAACTCAGAAGGTCCGACTTAGAGCCATATCTTGGTCTGCATTATCCTGCCATAGACATCCCTCAAGCTGCTCGTTTTCTGTTCAAGCAGAATCGAGTGAGGATGATTTGCAATTGCCGCGCAAAGCCTGTGCAGGTCATTCAAAGCGAGGAGCTCAAGCAGCCTCTGTGTCTGGTGAATTCAACTCTTCGAGCACCACATAATTGTCATTTGCAGTACATGTCAAATATGGGCTCCATAGCCTCATTAGCCATGGCAGTAGTCATTAACAGTGATAACTCGCCAACAAGGTTATGGGGCTTGGTCGTGTGCCATCATACTTCTCCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCCACATGGAGCTTCAATTGGCAGTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTCCGAGGCTCCCCACATGCATTGCTGACTAAATCTCCAAGTATAAAGGATCTCGTGAAGTGTGATGGTGCCGCATTGCTCTATAACGGGGCATGTTGTTTAGTAGGTGTAACTCCAACCGAAGCACAAGTCAAAGATATTGCAGAGTGGATACACAAGAACTATGAGGATTCCACGGGGCTGAGCACGGATAGTTTGGCTGATGCTGGGTACCCTGAAGCTGCTTTATTAGGCGATGCAGTGTGTGGCATGGCAGCTGCAAAAATCAGTTCAAAGGATTTTTTATTCTGGTTCAGGTCCCATGCTGCAAAGGAAGTCCAATGGGGAGGAGCCAAACATCACCCAGATGATAAGGATGATGGAGGAAGAATGCACCCAAGATCATCATTTAAAGCGTTTCTTGAGGTTGTAAAGAGTAAAAGTATGTCTTGGGAAGTTCAAGAAATCAATGCCATTCACTCATTGCAGATTATTATGAGGGAATCTTTTTTGAGTACTAGGGACAGTGATTCAAAGGCAGAACGTTCTGTCCAGCACCATGATACTGAGATTTCTGAACTCAGTTCAGTAGCTTGCGAAATGGTTAGGTTGATCGAAACAGCAACTGTTCCAATTTTTGGGGTTGATTCAACTGGTGTGATCAATGGATGGAATGATAAAATTTCTGAACTTTTGGGATTACAACCTAGTGAAGCTTTGGGGAAACTTCTGGTTAATGAAATTGTTCACGAAGATTCCCGTGGAACTGTTCAAGATTTACTTTCCCATGCTCTGGAAGGTAAGGAAGACAAAAATGTGGAGATAAAATTGAGAAGTTTCAGAACTGACAAAGAAAACACTACTGTGTATATTGTGGTTAATGCTTGCACAAGTAGGGATTACACAAACAAAATTGTTGGGGTTTGCTTTGTTGGGCAAGATGTTACATCCGAGAAATCCATGCTGGATAAATTTCTTCGTCTGCGGGGAGACTATGAGACTATTATTCAAAGTCTGAATCCATTGATTCCACCAATATTTGTTTCAGACAAGGATGGCTACTGCTGTGAATGGACTGCAGCCATGGAAAAACTTACTGGTTTGAGGAGAGAAGAAGTTGTAGGAAAAATGTTAGCTGGGGAGATCTTTGGGAATTTCTGCAGGTTGAAAGGTTTAGATACCCTCACTAGGTTTATGATCCTATTATATAAAGGTATTGGTGGTGAAGAAACCGAGAAGTGTCCATTAGGGTTTTTCAATAAGAATGGTAAGTTTTCAGAGGTGCTTGTAACCTCAAACAAGAGAACTGATGCAGAAGGAAATATCATTGGTTGTATCTGCTTCCTGCAAATTGCTGGGCCCAACTTGGAACAGGACTCTAAAGGAATTTGGGCGAGGGACAAGGAAGGCGTTTTGCAGCTCAAGGAGTTGACCTACATAAAGCAGGAGATGAAGAATCCTTTAAATGGCCTTAGATTTACTCATGAACTCCTTGTAAAATCTGGGGTTACTGAAAACCAGAAACTCTTCCTTGAAACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGATTTCAGAAGTTTGGAAGGAGGCCATGTAGAGATAAGCAGAGAAGAATTTCTCCTCGGGAGTGTTTTGGATGCGATTATCTGTCAAATAATGATGGTTGTCCGAGAGAAGAACATACAACTTTTTCATGAAATTCCACAAGAAATCAAAATGTTATCTCTTTGTGGCGATCAAATTAAGCTTCAGCTGGTTTTGTCAGATTTCTTACTTAACATAGTACGCCACACGCCTGTTCCGGACGGTTGGGTTGAAATCCACATTTCGTCTGGCTTGAAGCTTATCCAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGATTTAATCCAAGATATGGTTGGAGGAGGACAGCAGTGGACCTCGCAGGAAGGCCTTGCGTTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAGCGTTCTGTATGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATATCGAACTCAAGTTAAGGTGCCCGAGGGGGTCGATGGAAGCTACTACAAGCCAAAGGACTTGA 3378 44.67 MEKIRSGDRRMAAFSSSADSTRPSHSTSTGDGAAALAQYNADAGLMSKFEQSDASGESFNYSRSVLEASHQSVPEEQITSYLARIQRGGLVQPFGCLIAIEESGFKIVSYSENCFELLGLENESESSQGKGLIGVDMRTLFTAPSGASLAKAASAREISLSNPVWVYSRTNQKPFYAILHRIDVGIVIDLEPARSIDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSELRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICNCRAKPVQVIQSEELKQPLCLVNSTLRAPHNCHLQYMSNMGSIASLAMAVVINSDNSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLHMELQLAVQLTEKKVLKTQTLLCDMLLRGSPHALLTKSPSIKDLVKCDGAALLYNGACCLVGVTPTEAQVKDIAEWIHKNYEDSTGLSTDSLADAGYPEAALLGDAVCGMAAAKISSKDFLFWFRSHAAKEVQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVVKSKSMSWEVQEINAIHSLQIIMRESFLSTRDSDSKAERSVQHHDTEISELSSVACEMVRLIETATVPIFGVDSTGVINGWNDKISELLGLQPSEALGKLLVNEIVHEDSRGTVQDLLSHALEGKEDKNVEIKLRSFRTDKENTTVYIVVNACTSRDYTNKIVGVCFVGQDVTSEKSMLDKFLRLRGDYETIIQSLNPLIPPIFVSDKDGYCCEWTAAMEKLTGLRREEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYKGIGGEETEKCPLGFFNKNGKFSEVLVTSNKRTDAEGNIIGCICFLQIAGPNLEQDSKGIWARDKEGVLQLKELTYIKQEMKNPLNGLRFTHELLVKSGVTENQKLFLETSDACERQIMTIIEDMDFRSLEGGHVEISREEFLLGSVLDAIICQIMMVVREKNIQLFHEIPQEIKMLSLCGDQIKLQLVLSDFLLNIVRHTPVPDGWVEIHISSGLKLIQDGNEHIHLQIRMSHPGQGLPPDLIQDMVGGGQQWTSQEGLALNLSRRLLNKLNGSVLYVREQTKCYFLIDIELKLRCPRGSMEATTSQRT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13934016 13939776 + MC03g0709 Mch3g1027 683930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1027 1125 Gene3D PAS domain 756 864 - -
Mch3g1027 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 194 IPR035965 -
Mch3g1027 1125 MobiDBLite consensus disorder prediction 1 33 - -
Mch3g1027 1125 PANTHER OS08G0260000 PROTEIN 16 988 - -
Mch3g1027 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 387 IPR016132 -
Mch3g1027 1125 MobiDBLite consensus disorder prediction 13 33 - -
Mch3g1027 1125 SUPERFAMILY GAF domain-like 208 394 - -
Mch3g1027 1125 CDD HATPase_Phy-like 996 1108 IPR044767 -
Mch3g1027 1125 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 631 646 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 705 722 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 612 628 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PRINTS Phytochrome signature 725 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 615 723 IPR035965 -
Mch3g1027 1125 ProSiteProfiles PAS repeat profile. 609 680 IPR000014 -
Mch3g1027 1125 Gene3D - 402 575 IPR043150 -
Mch3g1027 1125 Pfam PAS fold 81 193 IPR013654 GO:0006355(InterPro)
Mch3g1027 1125 SMART pas_2 611 678 IPR000014 -
Mch3g1027 1125 SMART pas_2 745 812 IPR000014 -
Mch3g1027 1125 Pfam PAS fold 612 727 IPR013767 GO:0006355(InterPro)
Mch3g1027 1125 Pfam PAS fold 743 862 IPR013767 GO:0006355(InterPro)
Mch3g1027 1125 ProSiteProfiles Histidine kinase domain profile. 891 1110 IPR005467 -
Mch3g1027 1125 Pfam Phytochrome region 410 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch3g1027 1125 PIRSF Phytochrome_conventional 11 1117 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch3g1027 1125 Pfam His Kinase A (phospho-acceptor) domain 887 947 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch3g1027 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 757 861 IPR035965 -
Mch3g1027 1125 FunFam Phytochrome 605 737 - -
Mch3g1027 1125 SMART gaf_1 226 407 IPR003018 GO:0005515(InterPro)
Mch3g1027 1125 SMART HKATPase_4 996 1108 IPR003594 -
Mch3g1027 1125 Gene3D PAS domain 84 329 - -
Mch3g1027 1125 Pfam GAF domain 227 394 IPR003018 GO:0005515(InterPro)
Mch3g1027 1125 Gene3D PAS domain 610 732 - -
Mch3g1027 1125 ProSiteProfiles PAC domain profile. 683 739 IPR000700 -
Mch3g1027 1125 Gene3D - 207 558 IPR029016 -
Mch3g1027 1125 Gene3D - 926 1101 IPR036890 -
Mch3g1027 1125 CDD HisKA 889 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch3g1027 1125 NCBIfam PAS domain S-box protein 616 732 IPR000014 -
Mch3g1027 1125 CDD PAS 754 862 IPR000014 -
Mch3g1027 1125 SUPERFAMILY GAF domain-like 405 585 - -
Mch3g1027 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Mch3g1027 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 996 1099 IPR003594 -
Mch3g1027 1125 CDD PAS 620 727 IPR000014 -
Mch3g1027 1125 ProSiteProfiles PAS repeat profile. 743 795 IPR000014 -
Mch3g1027 1125 FunFam Phytochrome 402 532 - -
Mch3g1027 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1099 IPR036890 -
Mch3g1027 1125 SMART HisKA_10 884 948 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1027 K12123 - - csv:101214900 1848.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1027 Mch-Chr3:13934016 Mch5g0771 Mch-Chr5:5251230 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1771 . 93 1286 Histidine Kinase Gene Family AT2G17820 63.9 0.0e+00 1432.9
Mch9g1183 . 20 1006 Histidine Kinase Gene Family AT2G01830 70.7 0.0e+00 1324.7
Mch4g1467 . 24 987 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1322.8
Mch4g0340 . 189 1180 Histidine Kinase Gene Family AT2G01830 52.7 2.2e-274 942.2
Mch7g0079 . 63 1007 Histidine Kinase Gene Family AT2G01830 52.9 1.3e-269 926.4
Mch2g0478 . 304 1258 Histidine Kinase Gene Family AT2G01830 51.8 2.5e-265 912.1
Mch11g0473 . 1 992 Histidine Kinase Gene Family AT5G10720 58.5 6.4e-294 1006.9
Mch8g1989 . 2 1121 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1824.7
Mch4g0317 . 18 1136 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1230.7
Mch5g0771 . 27 1120 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1179.5
Mch5g0771 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.3 0.0e+00 1661.4
Mch3g1027 . 15 1046 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1237.6
Mch8g1989 . 22 1055 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1098.2
Mch4g0317 . 26 1089 Histidine Kinase Gene Family AT2G18790 51.2 0.0e+00 1078.2
Mch4g0317 . 12 1135 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1370.5
Mch5g0771 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1150.2
Mch8g1989 . 10 1115 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.9
Mch5g0771 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1701.0
Mch3g1027 . 25 1108 Histidine Kinase Gene Family AT4G16250 58.1 0.0e+00 1273.8
Mch8g1989 . 9 1116 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1146.7
Mch4g0317 . 26 1135 Histidine Kinase Gene Family AT4G16250 51.2 0.0e+00 1114.8
Mch3g1027 . 37 1109 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1339.3
Mch5g0771 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1260.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34