Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1040 ATGCTGTCAAACAACCATAGCTGCAGTCCTCCTACTCCTAGAACTAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTTCTCTCAATGAGGAGGCACGAGATGGTTATAGTCTGGGAGAAGTCAACAGCAGCGATCTCTTCACAAACTTTGGTGGAAGTTATGGGTCATTTTACGAGGAAGACATCTTGGAAGGCGTGTCAGTGGCAAAAGACTTCAGTGATGCATTACAAAGGCCAGAAGGGAGGTATTCTAAGCAACGCCTTCTAGTTGTAGCTAATAGGTTGCCTGTGTCTGCTGTTAGGAGAGGGAAGGAAACATGGCATCTTGAAATTAGCGTTGGTGGTCTAGTCAGTGCACTTTTAGGACTAAAGGAATTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTCCCGGATGAAGCCGGACAGAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGACGAGGAGATAGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCACTATTTCATTATCTTGGTCTTCCACAAGAAGATCGCCTTGCAACAACGCGTAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTACGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAGTGTCTTAAAGAGCATAATAATAAGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTGCCATCTCGTACAGAGCTTTTGAGATCTGTTCTGGCAGCCGATTTAGTTGGTTTCCACACATATGATTATGCTAGGCATTTTGTCAGTGCCTGCACCCGTATTCTTGGATTGGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCATGTTAAAGAACTTCAAGAAAGATTTGCTGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCTCAAAAGATTTTGGCATTCGAAAAGTTTCTTGAAGAAAATCCAAAGTGGCGTGATAGAGTAGTTTTGCTGCAGATTGCGGTGCCAACAAGAACAGATGTTCGTGATTATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGCATAAATGGGAGATTTGGCACTCTTACTGCAGTTCCAATACATCATCTGGATCGTTCGCTTGACTTCCATGCATTATGTGCTTTATACGCTGTTACTGATGTGGCACTAGTTACATCGTTAAGAGATGGAATGAATCTCGTGAGCTACGAGTTTGTGGCCTGTCAAGCTTCCAAGAAAGGCGTTCTTATCCTAAGTGAGTTTGCAGGTGCAGCCCAATCATTAGGTGCTGGTGCTGTTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGGAAGCAGATGAAAGAGAAAGACGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGATACAATAGTTGAAGCTCAGATCAGGACAAGACAGATACCACCTTTACTTCCAACTAGAGAGGCAGTGAATCGTTATGTTCAATCACATAACCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACTGAAGCAGTGGATGCCCTTGGGAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGACGTGAGAGAACCGTTGAAGAAACTTTGTGACGACCCGAATACGACGGTGGTTGTCCTCAGTGGAAGTGACAGAAGTGTCCTGGATGATAACTTCGGTGACTACAACATGTGGCTGGCAGCGGAAAATGGGATGTTCTTACGTCCTACTAAGGGAGAGTGGATGACAACAATGCCTGAAAATTTACATATGGACTGGGTGGAGAGCGTTAAGCATGTTTTCGAGTATTTCACTGAAAGAACTCCTCGATCTCATTTCGAGCTTCGCGAAACTTCTCTTCAGTGGAACTACAAGTTTGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGGGATTTGCTGCAGCATCTTTGGACTGGTCCAATCTCAAATGCCTCAGTTGATGTTGTCCAAGGCAGCCGATCAGTCGAGGTCCGAGCAGTTGGTGTGACAAAGGGTGCTGCCATTGATAGAATCTTGGGAGAAATAGTTCGTGATAAAGGCACAAACCAGCCTATTGACTACGTTCTTTGTGTTGGACACTTCCTAACCAAGGATGAAGACGTCTATACATTTTTCGAGCCCGACCTACCTTCCGAAGTGCCGCCTACAGCAAGAGCAACAGTCACCACCAACCCTTTTGGAGTACCAGTGCCAAAGCTCCCAAACAGTGGAGTCCCGCCCAAGTCGACGACGACACGCCTCAAGAAACAGCGTTCCCTTTCTGTTTTAGAAAGAAGAGCAAACAGCCACGGCAGTGCAGTGTTTTGGAGGCCTATAATGCAGGACCGATTGTCGCTGCACGAGGGCTCGTCCGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCTGTAGGGCGGAAGCGGTCGAATGCGAGATATCTTCTCGGATCATCGGATGATGTCGTCAAACTTGTGAAGGAGCTGGCCGAATGTTCAGCTTCAAGTTGA 2802 44.65 MLSNNHSCSPPTPRTRLERLLRERELRRSNRSSSLNEEARDGYSLGEVNSSDLFTNFGGSYGSFYEEDILEGVSVAKDFSDALQRPEGRYSKQRLLVVANRLPVSAVRRGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHVKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDRVVLLQIAVPTRTDVRDYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMEADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPTREAVNRYVQSHNRLVILGFNATLTEAVDALGRRYGQIRDMDLKVHPDVREPLKKLCDDPNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLQWNYKFADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGTNQPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPTARATVTTNPFGVPVPKLPNSGVPPKSTTTRLKKQRSLSVLERRANSHGSAVFWRPIMQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVKLVKELAECSASS 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14029602 14039416 - MC03g0721 Mch3g1040 683943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1040 933 MobiDBLite consensus disorder prediction 827 848 - -
Mch3g1040 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 341 543 - -
Mch3g1040 933 CDD HAD_TPP 592 812 - -
Mch3g1040 933 Gene3D Glycogen Phosphorylase B; 87 340 - -
Mch3g1040 933 Gene3D - 684 764 - -
Mch3g1040 933 FunFam Alpha,alpha-trehalose-phosphate synthase 618 687 - -
Mch3g1040 933 CDD GT20_TPS 94 559 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch3g1040 933 Pfam Trehalose-phosphatase 617 817 IPR003337 GO:0005992(InterPro)
Mch3g1040 933 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 87 928 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch3g1040 933 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch3g1040 933 Gene3D Glycogen Phosphorylase B; 341 543 - -
Mch3g1040 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 86 340 - -
Mch3g1040 933 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Mch3g1040 933 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Mch3g1040 933 SUPERFAMILY HAD-like 592 927 IPR036412 -
Mch3g1040 933 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 684 764 - -
Mch3g1040 933 Gene3D - 618 807 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0982 Mch-Chr11:6719969 Mch3g1040 Mch-Chr3:14029602 0 dispersed
Mch3g1040 Mch-Chr3:14029602 Mch9g1356 Mch-Chr9:15890577 2.80E-136 dispersed
Mch3g1040 Mch-Chr3:14029602 Mch4g0135 Mch-Chr4:891787 1.00E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1040 K16055 - csv:101213690 1688.7