Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1043 ATGGCGTACCCAGATGAGAGGCAGGTGGAGCAGCAGCGAAGAAGTGGGCGAGGGAAGATCGAAATAAAGAGAATAGAGAACACAACGAATCGGCAAGTAACTTTCTGTAAGCGGCGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTGGTCTTCTCCAGCCGTGGTCGCCTCTATGAATATGCCAATAACAGTGTTCGGGCGACGATTTCGAGGTACAAAAAGGCATGTTCGGATCCTTCCAGCGCCGGATCCGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGATCTCAGATAGGGAATTTGCAAAACCTAAACAGGCATTTGCTGGGGGATTCCATAAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGGAGGTCAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAACGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAGTTGAGCTGCACAATAATAATCAGCTGCTGCGAGCAAAGATAGCGGAGAGCGATAGAAACCAACAAAACCAAAACCCATCAACTGCAATGGGAGAAGGAGGAGCCCCAAATTTCGAGCAATATGACTCAAGAAACTACTTTCAACTCAACAACCACATCTCTCTCCAACTCGTAAGAAGGGGAAGCTTGTATTGTGGCTGTTTTTGTAGTATTGAACTCTCAGTCTGA 741 46.69 MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKIAESDRNQQNQNPSTAMGEGGAPNFEQYDSRNYFQLNNHISLQLVRRGSLYCGCFCSIELSV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14054124 14059381 - MC03g0724 Mch3g1043 683946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1043 246 MobiDBLite consensus disorder prediction 186 206 - -
Mch3g1043 246 FunFam agamous-like MADS-box protein AGL11 27 110 - -
Mch3g1043 246 SUPERFAMILY SRF-like 16 87 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 SMART madsneu2 15 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 Gene3D - 27 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 MobiDBLite consensus disorder prediction 186 202 - -
Mch3g1043 246 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 Pfam K-box region 98 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch3g1043 246 ProSitePatterns MADS-box domain signature. 17 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch3g1043 246 Coils Coil 101 121 - -
Mch3g1043 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 199 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch3g1043 246 CDD MADS_MEF2_like 16 89 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch3g1043 246 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0713 Mch-Chr2:4873489 Mch3g1043 Mch-Chr3:14054124 1.37E-83 dispersed
Mch3g1043 Mch-Chr3:14054124 Mch8g0149 Mch-Chr8:929268 3.51E-43 dispersed
Mch1g1976 Mch-Chr1:19399983 Mch3g1043 Mch-Chr3:14054124 5.82E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43029 PF01486 K-box 7.00E-27 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1043 K09264 - csv:101205366 344.354