Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1043 | ATGGCGTACCCAGATGAGAGGCAGGTGGAGCAGCAGCGAAGAAGTGGGCGAGGGAAGATCGAAATAAAGAGAATAGAGAACACAACGAATCGGCAAGTAACTTTCTGTAAGCGGCGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTGGTCTTCTCCAGCCGTGGTCGCCTCTATGAATATGCCAATAACAGTGTTCGGGCGACGATTTCGAGGTACAAAAAGGCATGTTCGGATCCTTCCAGCGCCGGATCCGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGATCTCAGATAGGGAATTTGCAAAACCTAAACAGGCATTTGCTGGGGGATTCCATAAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGGAGGTCAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAACGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAGTTGAGCTGCACAATAATAATCAGCTGCTGCGAGCAAAGATAGCGGAGAGCGATAGAAACCAACAAAACCAAAACCCATCAACTGCAATGGGAGAAGGAGGAGCCCCAAATTTCGAGCAATATGACTCAAGAAACTACTTTCAACTCAACAACCACATCTCTCTCCAACTCGTAAGAAGGGGAAGCTTGTATTGTGGCTGTTTTTGTAGTATTGAACTCTCAGTCTGA | 741 | 46.69 | MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKIAESDRNQQNQNPSTAMGEGGAPNFEQYDSRNYFQLNNHISLQLVRRGSLYCGCFCSIELSV | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14054124 | 14059381 | - | MC03g0724 | Mch3g1043 | 683946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1043 | 246 | MobiDBLite | consensus disorder prediction | 186 | 206 | - | - | |
Mch3g1043 | 246 | FunFam | agamous-like MADS-box protein AGL11 | 27 | 110 | - | - | |
Mch3g1043 | 246 | SUPERFAMILY | SRF-like | 16 | 87 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | SMART | madsneu2 | 15 | 74 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 24 | 71 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | PRINTS | MADS domain signature | 17 | 37 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | PRINTS | MADS domain signature | 52 | 73 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | PRINTS | MADS domain signature | 37 | 52 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | Gene3D | - | 27 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | MobiDBLite | consensus disorder prediction | 186 | 202 | - | - | |
Mch3g1043 | 246 | ProSiteProfiles | MADS-box domain profile. | 15 | 75 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | Pfam | K-box region | 98 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch3g1043 | 246 | ProSitePatterns | MADS-box domain signature. | 17 | 71 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch3g1043 | 246 | Coils | Coil | 101 | 121 | - | - | |
Mch3g1043 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 16 | 199 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch3g1043 | 246 | CDD | MADS_MEF2_like | 16 | 89 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch3g1043 | 246 | ProSiteProfiles | K-box domain profile. | 101 | 191 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0713 | Mch-Chr2:4873489 | Mch3g1043 | Mch-Chr3:14054124 | 1.37E-83 | dispersed | |
Mch3g1043 | Mch-Chr3:14054124 | Mch8g0149 | Mch-Chr8:929268 | 3.51E-43 | dispersed | |
Mch1g1976 | Mch-Chr1:19399983 | Mch3g1043 | Mch-Chr3:14054124 | 5.82E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43029 | PF01486 | K-box | 7.00E-27 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1043 | K09264 | - | csv:101205366 | 344.354 |