Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1048 ATGATGGTGGTCAAGAGCTTCTTCGTGTTCATGATTATTGGGCTGGATTGCTTCATGCTCCTGAGATTTGCAGATTCCAAGCTTCCCCAAGAAGAGGTTGATGCACTCCAGCAAATTACGAGAAAGTTAGGTGCAGTTTATTGGAAATTCAACAGTGACTCCTGTAGCATTGAAATGTTTGGGCTCACAGAAAAAGCTCCGAGGGAATCTGAGAGTAAAATTACTTGTGATTGCAAGTTCGCGAAAGAAACAATTTGTCATGTCATAAAGATGAAGTTCAAAAAGCATAATTTGCCCGGCGTTCTTCCACCCGAAATGGTCAAACTTCCTTACCTGCAAGAAATTGATTTGGCATACAATTACCTTCATGGTAGTATACCTCGGGAGTGGGCTTCAATGCGGCTGTCGTGGATCTCTGTTCTTGTAAATCGGTTATCAGGTGAAATACCAGCTGAATTGGGAAATATTACTACTCTAACATACCTGAACCTTGAAGCAAACCAATTTACTGGTGTAATCCCATCACAACTTGGGAGGTTGAGCGGTCTGCAAACCTTGATGCTATCATCTAATCAATTGACAGGCACATTGCCGACAACGTTTGCTGGATTAGAAAACCTTAGAGATTTCCGAATAAATGATATCGACCTTAATGGAACCATGCCAGACTTCATACAGAATTGGAAACAACTCGAAAGATTAGAACTACATGCAAGTGGACTTCAGGGACCAATTCCTGCAAATATATCCTATTTGATTAACTTAAGAGAGTTGAGGATCAGTGATATGAAAGGGCCAAAGCAGGATTTTCCCCTATTGATGGGCATGTTTAGCATGATGAGACTGGTTCTGAGAAATTGTAACCTTGCTGGAAAGATTCCTCCATATGTGTGGAAGATGCCGGTTATGGAACTGATGGACCTCAGCTTTAACCAGTTGACTGGGGAAGTTCCAGAGGATATAACCATAGAGCGCCTTAGATTCATCTTCCTAAGTGGCAATTTGCTAAGTGGCAATCTACCAGAGTCAATCTTTAAGGATGGAACTAATGTCGATCTTTCATACAATAACTTGGAATGGCAAGGCTCTAAGCAGCATGCTTGTAGAACTAACATGAATATGAATCTGAACTTGTTTCGTTCTTCCACCGGCAACACCCTCAAACAGGGGGGTCTTCCATGCGTGGAGAATTCCATCTGTCCAAAATATTCTAGATGTTGGTTCATCAGTTCTGGTGGGAGTGACTTTACCGTGGACGTAGATGGCGACAACATTCTCTACCATGGGGATGTAGATGTCGAAGGTGGGACGGCAAAATTCTACATTGATCCTGATAGCTACTGGGGATTGAGTAGTACTGGGGATTTCATGGATGATTATGACTACCAAAATACACGATACACTTTATCCCTGCCCTCAACAAATTTGTCCGTGATGTATTCAACAGCACGTCGTAGTCCAATTTCACTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCTGTTAAGCTTCACTTTGCAGAGATACAGTTTACGGATAATCAGACATATACAAGTCTTGGAAGGCGGAAATTTGATGTCTACATTCAGGATAGATTGGTATTGGAAAATTTTGATATTGAAGAGAGGGCGGGAGGAGCTCAAAAGCCGACAGAAGTACAGTTCCATAACATCACTGTAACTAATCATGTTCTGGAGATCCGATTCTCTTGGGCTGGAAAAGGGACAACTAGGGTTCCTACTAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAGTTATTGTACAATCAGTGGAAGTGGGAAACAAAGAACTTTATCTATTGTGGTTGGAGTTACGAGTGGACTATTTTGCCTTATGATCATCATATTTGGTTTTATTTGGTGGAAAGGCACTCTTAGAGCAATAAACCAAAATGAAGGTGCTACAGATGTTGCAGGAGTAATAGAGGTGCAAACTGGACTTTTTACCTTGAAACAAATAAAAGCTGCCACCAATGCTTTTGATTCTTCCAATAAAATTGGAGAAGGCGGTTTTGGCCCTGTTTTCAAGGGTCAACTGGCTGATGGTACTCTTGTAGCAATTAAGCAGCTCTCATCCAAATCAAGGCAGGGAAATCGCGAATTTCTGAATGAGATAGGGATGATCTCTTGTTTACAGCACCCGAATCTAGTCAAGCTTCATGGATGCTGTATTGAAGGGGATCAACTGTTGTTGGTGTATGAATACATGGAAAACAATAGTCTTGCCCGAGCGCTATTCGGTCCAGATCACACTCGGCTTAATCTAGATTGGCCAACCAGGCTTAAAATCTGTATCGGTGTAGCAAAAGGCTTAGCATATCTCCACGAGGAATCAAACCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTATTGGATAGTGACTTGAATCCCAAAATATCTGATTTTGGTTTGGCTAAGCATGACGACGAGGAGAAGACCCACATCACCACCAGGGTGGCTGGGACCATAGGATATATGGCCCCAGAATATGCACTTTGGGGATATCTGTCCCACAAAGCAGATGTTTACAGTTTTGGAGTTGTGGCCTTGGAAGTTATTAGTGGAAGAAGCAACAATGATTTTGTACCAAGTGAAACTTGTGTTTGCATTCTAGACTGGGCCTGTTGTTTGCAACAAAGTGGAAACTTCATGGAGCTGGTTGATGAGATGTTGAGGCCAGAAATCAACAGGAAAGAAGCAGAAAATATGGTAAAGGTAGCCCTTCTTTGCACAAACGCTTCAGCATCAGTAAGGCCTACGATATCGGAGGTGGTGAACATGCTCGAAGGACGAATGGAGATTCCAGACCTGAACCCGGGACCGAGCACTTATACCGAAGATCTGAGGTTCAAGGCAATGAGAGATGTGCGTAAACCGCAGCATAGCCAAAGCGGGAGTGACAGCCAGACCCATTCCACAATGCAAACATTTGGTTCTTCCTCTACATCTGGAAATGAGTTCTGTGAAATCAGCCCAGAGCCAAGATCATCATACCATCGTCCTGAATAA 3066 42.37 MMVVKSFFVFMIIGLDCFMLLRFADSKLPQEEVDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVIKMKFKKHNLPGVLPPEMVKLPYLQEIDLAYNYLHGSIPREWASMRLSWISVLVNRLSGEIPAELGNITTLTYLNLEANQFTGVIPSQLGRLSGLQTLMLSSNQLTGTLPTTFAGLENLRDFRINDIDLNGTMPDFIQNWKQLERLELHASGLQGPIPANISYLINLRELRISDMKGPKQDFPLLMGMFSMMRLVLRNCNLAGKIPPYVWKMPVMELMDLSFNQLTGEVPEDITIERLRFIFLSGNLLSGNLPESIFKDGTNVDLSYNNLEWQGSKQHACRTNMNMNLNLFRSSTGNTLKQGGLPCVENSICPKYSRCWFISSGGSDFTVDVDGDNILYHGDVDVEGGTAKFYIDPDSYWGLSSTGDFMDDYDYQNTRYTLSLPSTNLSVMYSTARRSPISLTYFHHCLDNGNYSVKLHFAEIQFTDNQTYTSLGRRKFDVYIQDRLVLENFDIEERAGGAQKPTEVQFHNITVTNHVLEIRFSWAGKGTTRVPTRGVYGPLISAISVYSDLSYCTISGSGKQRTLSIVVGVTSGLFCLMIIIFGFIWWKGTLRAINQNEGATDVAGVIEVQTGLFTLKQIKAATNAFDSSNKIGEGGFGPVFKGQLADGTLVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYMENNSLARALFGPDHTRLNLDWPTRLKICIGVAKGLAYLHEESNLKIVHRDIKATNVLLDSDLNPKISDFGLAKHDDEEKTHITTRVAGTIGYMAPEYALWGYLSHKADVYSFGVVALEVISGRSNNDFVPSETCVCILDWACCLQQSGNFMELVDEMLRPEINRKEAENMVKVALLCTNASASVRPTISEVVNMLEGRMEIPDLNPGPSTYTEDLRFKAMRDVRKPQHSQSGSDSQTHSTMQTFGSSSTSGNEFCEISPEPRSSYHRPE 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14079822 14090080 - MC03g0727 Mch3g1048 683951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1048 1021 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Mch3g1048 1021 SUPERFAMILY L domain-like 84 344 - -
Mch3g1048 1021 Gene3D Ribonuclease Inhibitor 268 385 IPR032675 -
Mch3g1048 1021 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 958 - -
Mch3g1048 1021 Gene3D Phosphorylase Kinase; domain 1 640 751 - -
Mch3g1048 1021 Pfam Protein tyrosine and serine/threonine kinase 679 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1048 1021 MobiDBLite consensus disorder prediction 981 1009 - -
Mch3g1048 1021 Gene3D Ribonuclease Inhibitor 198 264 IPR032675 -
Mch3g1048 1021 Gene3D - 405 600 - -
Mch3g1048 1021 CDD STKc_IRAK 682 949 - -
Mch3g1048 1021 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 973 IPR051824 -
Mch3g1048 1021 SUPERFAMILY Protein kinase-like (PK-like) 659 949 IPR011009 -
Mch3g1048 1021 Gene3D Transferase(Phosphotransferase) domain 1 752 955 - -
Mch3g1048 1021 MobiDBLite consensus disorder prediction 974 1021 - -
Mch3g1048 1021 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Mch3g1048 1021 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Mch3g1048 1021 Pfam Leucine rich repeat 158 210 IPR001611 GO:0005515(InterPro)
Mch3g1048 1021 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 645 751 - -
Mch3g1048 1021 Pfam Malectin domain 406 594 IPR021720 -
Mch3g1048 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1048 1021 SMART serkin_6 676 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1048 1021 Gene3D Ribonuclease Inhibitor 32 197 IPR032675 -
Mch3g1048 1021 ProSiteProfiles Protein kinase domain profile. 676 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0992 Mch-Chr11:6867261 Mch3g1048 Mch-Chr3:14079822 1.65E-235 dispersed
Mch3g1048 Mch-Chr3:14079822 Mch4g0077 Mch-Chr4:524273 4.54E-205 dispersed
Mch3g1048 Mch-Chr3:14079822 Mch4g0151 Mch-Chr4:1032141 6.68E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77255 PF07714 PK_Tyr_Ser-Thr 1.20E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1048 - - - 0.0