Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1052 ATGACGTCCGGGACGAGAATGCCAACTTGGAAGGAGAGGGAGAACAACAAACGCCGTGAGCGGCGCCGCCGTGCCATCGCCGCTAAGATCTTTCTCGGCCTCAGAATGTACGGCAATTACAAGCTCCCCAAGCACTGCGACAACAACGAGGTTCTCAAAGCCCTCTGCGATGAAGCTGGATGGACTGTCGAAGAGGACGGCACTACCTATCGAAAGGGATGCAAGCCTGTGGAGCGCAATATCATGGGCGGATCAGCATCTGCTAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCAAGTCCTGCTTCTTCGTCCTTCCCAAGCCCCACTTCTTCCCGTTACGCCATTAAAGCCAATGACAATGCTCCTGACGCCAATTCACTAATCCCATGGCTGAAGAACCTCTCCTCCGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCACAATCTTTATTTAACTGGTGGCTCCATAAGTGCGCCTGTCACCCCTCCATCAAGCTCCCCGACAGCTCGAACACCCAGAAAACCGAATGATTGGGACAATCATCCAGCTGCTGCTCCTGCTTGGGCTGCGCAGTGCTTCTCATGCTTGCCTGCATCAACCCCGCCGAGCCCCGGGCGTCAGGTGTTGGCCGATTCGGCATGGCTTGATAGTATGCGGATTCCCCAAAGTGGACCGTCGTCTCCAACCTTCACTCTTGTGGCAAGGAATCCGTTTGGGTTTAAGGAGGCATTGTCCGCCGGAGGGTCTCGGAATTGGACTCCTGCGCACAGCGGGACATGCTCACCCACGATCGCTGCAGGTGTTGATCATACTTCAGATGTTCCAATGACGGATGGAACTTCTGCGGAATTTGCCTTTGGAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCAGATGATCTTGAACTTACACTTGGGAATTCTAGAACGAGG 984 53.66 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERNIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPTSSRYAIKANDNAPDANSLIPWLKNLSSGSSSASSRLPHHNLYLTGGSISAPVTPPSSSPTARTPRKPNDWDNHPAAAPAWAAQCFSCLPASTPPSPGRQVLADSAWLDSMRIPQSGPSSPTFTLVARNPFGFKEALSAGGSRNWTPAHSGTCSPTIAAGVDHTSDVPMTDGTSAEFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSRTR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14102456 14105496 - MC03g0731 Mch3g1052 683955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1052 328 MobiDBLite consensus disorder prediction 1 21 - -
Mch3g1052 328 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 141 IPR008540 -
Mch3g1052 328 MobiDBLite consensus disorder prediction 102 122 - -
Mch3g1052 328 MobiDBLite consensus disorder prediction 160 189 - -
Mch3g1052 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 328 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1039 Mch-Chr10:7553712 Mch3g1052 Mch-Chr3:14102456 1.46E-154 dispersed
Mch3g1052 Mch-Chr3:14102456 Mch8g0752 Mch-Chr8:5326403 5.59E-57 dispersed
Mch3g1052 Mch-Chr3:14102456 Mch1g1478 Mch-Chr1:16329458 5.45E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43030 PF05687 BES1_N 1.90E-66 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1052 - - - 0.0