Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1054 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTCTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAAACCCTAGCGTTAGTTGCGACCGAGCTCGTTTCGCGATTTTCAGACAAGGCCTTCTTCTTCCAGCGCCGGAATTCGCGATCTCTGATACGGAGGCTCCAGGTTTGCCTCGTCTTTTTGGAATTTTTGAAGGATTCGGATGCCACTTTGCCTTACACCGCCTTGCTCTGTTTGAAAGAGCTTTATTTATTACTCTACCGCTCCAAGATACTTCTTGATTATTGCTCCGAATCGAGCAAGTTGTGGCTCTTGCTTCAGAACCACTCCATCTCCGGCCATTTCAATGATTTGAATTTAGAGTTGTTGACCTTTTTGGATGTGTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGACATTAGAGAGCAGGTGGAGCTCTTGCAGAAGCAGTTGAAAAGGGCGAGGATATTTATTGATGAACGTGATGAAGCGTTGAGGATTCGCTTCCTTTTGTTTCTTGAGGAATTTGAGAACGGGCGGCTTCCCAATCCGAGAGAAATGAGGGAGTTTTTTGTGGACAAGTTGGGGATTCGGAATGCCAAGAGTTGCAGAGCTGAAATTGAGTTTCTAGAGGAGCAGATTGTCAATCATGAGGGCGACATCGAGCCCACGGTAGCAGTGCTATATGGTTTCGTTGCATTTACGAGATACAGCAGGTTTTTCCTCTTTGGGTTTGAGGAAGATGAAATCGAATCAGGTGCAACGAACCAGAAGAAGCTGAAGAAGAATTTGATAACACAGGAAATTGCCGAGACGTTTTTAACCATTCCAAGGGATTTCTGCTGTCCAATATCACTGGATTTGATGAAAGACCCAGTGATAGTTTCTACAGGCCAGACATACGATCGCAGTTCAATCGTCCGGTGGATGGAAGAAGGGCACTGCACTTGCCCGAAGACGGGGCAAATGCTCATCCATACCCGCCTCGCTCCCAACCGTGCTTTAAGGAATTTGATCATGCAGTGGTGCATAGCCCACGGAGTTCCTTATGATCCACCAGAGGGGATGGATCCATCTGCAGAAAGTTTTGCAACGGCTTCCCCCACTAGAGCTGCACTAGAAGCCAACAGAGCGACAGCTGCAATTCTTATCCAACAGTTAGCAATTGGATCACAAGATGCGCAGACCATCGCTGCTCGAGAGATTCGTTTGTTGGCGAAAACAGGGAAAGAGAACCGTGCTTTTATTGCAGAAGCCGGTGCCATCCCTCATCTCCAAAAGTTGCTGGCTTCCCCCAACCCCGTTGCACAGGAGAATTCGGTGACTGCTATGCTCAATCTCTCAATATATGACAAGAACAAAAGTCTGATTATGAGTGAGGTAGGGTGCTTAGGATCAATAACCGAAGTGTTGAGATTTGGACACACTACAGAAGCACGGGAAAATGCTGCAGCTACATTATTCAGCCTGTCTGCAGTTCATGACTTCAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTGGCAGGTTTGTTGAGAAATGGTACACCAAGAGGAAAGAAGGATGCCGTAACAGCCTTATTTAATCTGTCAACCCACACCGATAACTGTGTGCGGATGATCGAGGCCGGGGCAGTAACAGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCAGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGTGCTGCAGCAGTGGGTAAAGAGGAGAGAGCCGTGGCAGGATTGATAGCAATGATGCGATGTGGGACGCCGAGAGGAAAAGAGAACGCAGTTGCAGCTTTGCTTGAGTTATGCCGAAGTGGGGGAGCTGCCACAACCGAGCAAGTATTCAAGGCCCCCGCTTTGGCTGGATTGCTCCAAACGCTTCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCACTAGCCAGAGTGTTCCAAAGATGCGAGCATGTTGCAATGCATTATGGTGGATTGGGTGTTGGTTATGCCTATGCAACTAACTCGGCCTCGGATCCGAGCTTTACAAGCGAGGTGTCTGTGCCAATATCCATCTCGGTACCCGTCGTA 2139 48.85 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLALVATELVSRFSDKAFFFQRRNSRSLIRRLQVCLVFLEFLKDSDATLPYTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGVDIREQVELLQKQLKRARIFIDERDEALRIRFLLFLEEFENGRLPNPREMREFFVDKLGIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLYGFVAFTRYSRFFLFGFEEDEIESGATNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVIVSTGQTYDRSSIVRWMEEGHCTCPKTGQMLIHTRLAPNRALRNLIMQWCIAHGVPYDPPEGMDPSAESFATASPTRAALEANRATAAILIQQLAIGSQDAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDFKKRIAEEGGAVEALAGLLRNGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAAAVGKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYAYATNSASDPSFTSEVSVPISISVPVV 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14120268 14122406 - MC03g0733 Mch3g1054 683957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1054 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 SUPERFAMILY ARM repeat 394 674 IPR016024 -
Mch3g1054 713 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1054 713 SUPERFAMILY RING/U-box 277 362 - -
Mch3g1054 713 CDD RING-Ubox_PUB 289 341 IPR045210 -
Mch3g1054 713 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Mch3g1054 713 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1054 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Mch3g1054 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Mch3g1054 713 Gene3D - 391 512 IPR011989 -
Mch3g1054 713 Coils Coil 212 232 - -
Mch3g1054 713 Gene3D - 513 667 IPR011989 -
Mch3g1054 713 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Mch3g1054 713 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1805 Mch-Chr1:18254212 Mch3g1054 Mch-Chr3:14120268 3.20E-37 dispersed
Mch3g1054 Mch-Chr3:14120268 Mch4g2494 Mch-Chr4:25696194 5.46E-86 dispersed
Mch3g1054 Mch-Chr3:14120268 Mch3g1460 Mch-Chr3:16894727 8.72E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1054 - - - 0.0