Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1054 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTCTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAAACCCTAGCGTTAGTTGCGACCGAGCTCGTTTCGCGATTTTCAGACAAGGCCTTCTTCTTCCAGCGCCGGAATTCGCGATCTCTGATACGGAGGCTCCAGGTTTGCCTCGTCTTTTTGGAATTTTTGAAGGATTCGGATGCCACTTTGCCTTACACCGCCTTGCTCTGTTTGAAAGAGCTTTATTTATTACTCTACCGCTCCAAGATACTTCTTGATTATTGCTCCGAATCGAGCAAGTTGTGGCTCTTGCTTCAGAACCACTCCATCTCCGGCCATTTCAATGATTTGAATTTAGAGTTGTTGACCTTTTTGGATGTGTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGACATTAGAGAGCAGGTGGAGCTCTTGCAGAAGCAGTTGAAAAGGGCGAGGATATTTATTGATGAACGTGATGAAGCGTTGAGGATTCGCTTCCTTTTGTTTCTTGAGGAATTTGAGAACGGGCGGCTTCCCAATCCGAGAGAAATGAGGGAGTTTTTTGTGGACAAGTTGGGGATTCGGAATGCCAAGAGTTGCAGAGCTGAAATTGAGTTTCTAGAGGAGCAGATTGTCAATCATGAGGGCGACATCGAGCCCACGGTAGCAGTGCTATATGGTTTCGTTGCATTTACGAGATACAGCAGGTTTTTCCTCTTTGGGTTTGAGGAAGATGAAATCGAATCAGGTGCAACGAACCAGAAGAAGCTGAAGAAGAATTTGATAACACAGGAAATTGCCGAGACGTTTTTAACCATTCCAAGGGATTTCTGCTGTCCAATATCACTGGATTTGATGAAAGACCCAGTGATAGTTTCTACAGGCCAGACATACGATCGCAGTTCAATCGTCCGGTGGATGGAAGAAGGGCACTGCACTTGCCCGAAGACGGGGCAAATGCTCATCCATACCCGCCTCGCTCCCAACCGTGCTTTAAGGAATTTGATCATGCAGTGGTGCATAGCCCACGGAGTTCCTTATGATCCACCAGAGGGGATGGATCCATCTGCAGAAAGTTTTGCAACGGCTTCCCCCACTAGAGCTGCACTAGAAGCCAACAGAGCGACAGCTGCAATTCTTATCCAACAGTTAGCAATTGGATCACAAGATGCGCAGACCATCGCTGCTCGAGAGATTCGTTTGTTGGCGAAAACAGGGAAAGAGAACCGTGCTTTTATTGCAGAAGCCGGTGCCATCCCTCATCTCCAAAAGTTGCTGGCTTCCCCCAACCCCGTTGCACAGGAGAATTCGGTGACTGCTATGCTCAATCTCTCAATATATGACAAGAACAAAAGTCTGATTATGAGTGAGGTAGGGTGCTTAGGATCAATAACCGAAGTGTTGAGATTTGGACACACTACAGAAGCACGGGAAAATGCTGCAGCTACATTATTCAGCCTGTCTGCAGTTCATGACTTCAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTGGCAGGTTTGTTGAGAAATGGTACACCAAGAGGAAAGAAGGATGCCGTAACAGCCTTATTTAATCTGTCAACCCACACCGATAACTGTGTGCGGATGATCGAGGCCGGGGCAGTAACAGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCAGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGTGCTGCAGCAGTGGGTAAAGAGGAGAGAGCCGTGGCAGGATTGATAGCAATGATGCGATGTGGGACGCCGAGAGGAAAAGAGAACGCAGTTGCAGCTTTGCTTGAGTTATGCCGAAGTGGGGGAGCTGCCACAACCGAGCAAGTATTCAAGGCCCCCGCTTTGGCTGGATTGCTCCAAACGCTTCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCACTAGCCAGAGTGTTCCAAAGATGCGAGCATGTTGCAATGCATTATGGTGGATTGGGTGTTGGTTATGCCTATGCAACTAACTCGGCCTCGGATCCGAGCTTTACAAGCGAGGTGTCTGTGCCAATATCCATCTCGGTACCCGTCGTA 2139 48.85 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLALVATELVSRFSDKAFFFQRRNSRSLIRRLQVCLVFLEFLKDSDATLPYTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGVDIREQVELLQKQLKRARIFIDERDEALRIRFLLFLEEFENGRLPNPREMREFFVDKLGIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLYGFVAFTRYSRFFLFGFEEDEIESGATNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVIVSTGQTYDRSSIVRWMEEGHCTCPKTGQMLIHTRLAPNRALRNLIMQWCIAHGVPYDPPEGMDPSAESFATASPTRAALEANRATAAILIQQLAIGSQDAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDFKKRIAEEGGAVEALAGLLRNGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAAAVGKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYAYATNSASDPSFTSEVSVPISISVPVV 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14120268 14122406 - MC03g0733 Mch3g1054 683957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1054 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 SUPERFAMILY ARM repeat 394 674 IPR016024 -
Mch3g1054 713 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1054 713 SUPERFAMILY RING/U-box 277 362 - -
Mch3g1054 713 CDD RING-Ubox_PUB 289 341 IPR045210 -
Mch3g1054 713 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Mch3g1054 713 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g1054 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Mch3g1054 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Mch3g1054 713 Gene3D - 391 512 IPR011989 -
Mch3g1054 713 Coils Coil 212 232 - -
Mch3g1054 713 Gene3D - 513 667 IPR011989 -
Mch3g1054 713 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Mch3g1054 713 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Mch3g1054 713 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1054 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1805 Mch-Chr1:18254212 Mch3g1054 Mch-Chr3:14120268 3.20E-37 dispersed
Mch3g1054 Mch-Chr3:14120268 Mch4g2494 Mch-Chr4:25696194 5.46E-86 dispersed
Mch3g1054 Mch-Chr3:14120268 Mch3g1460 Mch-Chr3:16894727 8.72E-97 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008312 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35