Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g1057 | ATGGATGGTAGCTTTATCAACAACAACCACCGCTACTTTTATTCTGCAGACCAAGATCAAGATCAGGACACCCACAAATTAGGCCCGGATAATTCTCCACCTCCTTCTTCCTCCGCCGCCAAGAAGGGCAGGAGAGGGATGAAGAAGAAAGTGGTCTCGGTGAGAATCAACAGCGAGAGCCCCAGGAACAATTGCGGTGGCAGCGGCGGTAGTACAACCCCACCTTCAGATTCTTGGGCCTGGAGAAAATACGGTCAGAAGCCCATCAAAGGCTCCCCTTACCCCAGGGCGTATTATCGGTGTAGCAGTTCCAAGGGGTGTCCGGCGAGGAAGCAAGTGGAGAGGAATCGTCTGGATCCCTCCATGTTGCTCATTACGTATTCCTGCGAGCATAACCATTCCGGTCCGGTTTCCAGAAACAATAACAACCACCACCACTCCGCCCGGGGCGTGTCAAAACCCGGTTCGCCGGAGACAACTCCGGTTCAGGCCGTGGTGGAGCCGGAGCCGGAGGAGAAATTCGTGGATATGGGAGACGAGTCGTTGATAACGGGGGACGAGTTCAGCTGGTTCGGGGAGATGGAAACGACGTCGTCCACGGTGCTCGAGAGCTCAATTTTCACGGACAGTTCGACCGGGGTGGGACCGGGACTGGGAGATTCCATTTCGAGTGACGTGGCAATGCTGTTTCCGATGGGAGATGATGACGTGGACGAATCGCTGTTTGCGGATCTCGGGGAGTTGCCGGGCTGCTCCGTCGTATTCCGGCACGGCGGAGGCCGGGGATTGTCGGTGGAAGAACAGCCACCTGGCAGTGCTCAACGACGTCGTATCACTCCTTGGTGCGGAACCACCACCTGA | 861 | 56.45 | MDGSFINNNHRYFYSADQDQDQDTHKLGPDNSPPPSSSAAKKGRRGMKKKVVSVRINSESPRNNCGGSGGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPSMLLITYSCEHNHSGPVSRNNNNHHHSARGVSKPGSPETTPVQAVVEPEPEEKFVDMGDESLITGDEFSWFGEMETTSSTVLESSIFTDSSTGVGPGLGDSISSDVAMLFPMGDDDVDESLFADLGELPGCSVVFRHGGGRGLSVEEQPPGSAQRRRITPWCGTTT | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 14149178 | 14150892 | - | MC03g0735 | Mch3g1057 | 683960 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g1057 | 286 | ProSiteProfiles | WRKY domain profile. | 76 | 136 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g1057 | 286 | MobiDBLite | consensus disorder prediction | 134 | 159 | - | - | |
| Mch3g1057 | 286 | SMART | WRKY_cls | 75 | 135 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g1057 | 286 | FunFam | WRKY transcription factor 65 | 62 | 136 | - | - | |
| Mch3g1057 | 286 | MobiDBLite | consensus disorder prediction | 262 | 286 | - | - | |
| Mch3g1057 | 286 | MobiDBLite | consensus disorder prediction | 134 | 161 | - | - | |
| Mch3g1057 | 286 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Mch3g1057 | 286 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 25 | 252 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
| Mch3g1057 | 286 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Mch3g1057 | 286 | MobiDBLite | consensus disorder prediction | 56 | 79 | - | - | |
| Mch3g1057 | 286 | Pfam | WRKY DNA -binding domain | 77 | 133 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g1057 | 286 | Gene3D | WRKY domain | 68 | 137 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g1057 | 286 | SUPERFAMILY | WRKY DNA-binding domain | 73 | 135 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g1057 | Mch-Chr3:14149178 | Mch5g0423 | Mch-Chr5:2897503 | 1.87E-31 | dispersed | |
| Mch3g1057 | Mch-Chr3:14149178 | Mch4g0134 | Mch-Chr4:885378 | 4.99E-37 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43032 | PF03106 | WRKY | 6.00E-25 | CL0274 | Mch | TF |
Pathway information