Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g1060 | ATGTCGGAGGCACCGCCGAGACGACTGAGGGGTCACAAAGCCACTGCAACGTGCTGCATCGCCTCGCATGACCGTCCTGGCCTTGTCGCTACTTCAGGCGAGGATGGTTGTGTTTGCTGGTTTGACATGAGATGCAAAGATGTCGTATCCATTATGGAAGTTGGAACAGAACCTATTTCATCCATATGTTTCAAGCCAGGGAATGAAGATGTTATTTACATCTCCTCCGTGAAGGAAATTAAGTCATTTGATGTCCATCAGGCCACATCATCGAAACCATTGGGGAGTTATAGTTACAACAAAGAGGAGATCAATCAGGTTTCTTGCAGCCCAAAATCTTCTTTTCTCGCTGCTGCCGATGATGGTGGTGATGTTAAGATCATTGACATTCACCAGCAATGCTTATATAAAACATTAAGATCTGGCCATTCGAGTATCTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCATGGGAAGTTATTACGGGAGGTCTTGATTCAAAGCTCATTATTTGGGACTTCTCCAGAGGGCGCCCCATCAAAGTACTTGATTTTGGTAGCCCGGACAACAACCCTTCCAGTAACTCTGGACAATGTTTTAATCCAGCATTTATTCATGCAATAGCGGTTCCTGAAGTTAATATGCTGGACAAATTGGGTCAGATATGTGTCGTGGCAAGGGGCGACGGTGTCGTGGACATGATTGATATTGAATCTGAGAAATCAAAGGTTTCTACAAAGGGTAAAAGATTACAAACAAGACCCAAGTCTAAGGGAGTTACTGCAGCTTGTGATACGGATAACCAAGAAGAAACTGGAAGAAAGAATTTACATTTGGATTACACTGTTGGTGGACATTCTGCTGCTGTGTCCTGTGTGACATTTTCTCAATTTGGGGAGAAAGGGAAGTTCATAGTATCTGGTGGGAATGATAAATGCATAAAGCTTTGGAATTGTTCTGGAGTTCCTGATGCTGGGGATGCAGGCAGAAACAACAGTCTTCTCCATTTGAACATCAATCTGAGCAAAAAGGTGAATTGGCTATGTACCACTCCATCTGAAACAGAAAACCTAATCGTTTGTGATACCAGTAAAGTAGTGAAGATGGGTGAAACCAACTTCCCAACCTCTCGTCTTTTCAACTACTACCCTCCATTCTTCCGCATTTCTAAAATGTTTTCATCGCCCTCTCTCACAGACCTATACCACTCATCTGGGTTGTTCCTTTTTCATATAAAATCACCCAGAAAACCTAGATTCTGGGGCTGCGGCGATTATCTTTCATTTGGGGTTTGCAGAATTCGAGTGAGAACAAAAATGATGGTGTCTGATGTCCCGATTTGCCACAACTGTGGTGAGCAAGTCGGAGTTGATGCCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCATATTTGCAAAGTCTGCGTCCAGTATGATATTAAGGAAGGCCGAAAAGCTTGCTTGCGGTGCGGGGCTCCATTTGACGAGAACTTACTGATGGATGCTGATACGAAGATGTCAGGAGATCGGAACACAATAGCATCTCATCTCAGTCATTCTCAGGATGCCGGAGTTCATGCTAGACATGTCAGTAGTGTGTCAACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTTCCGTGAAGACTGAACAAGAAGCTCAAATTCCACCTCAACAACAAATGGAGGAGAAACAGATTTCAGAGCAGGCTGCAGTTGAACACACATTTTCTTCAGTTTATCCAATTCCATCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAATATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATTATATGTGAAATCTGGTTTGCCTTCTCTTGGGTGTTGGATCAGTTCCCTAAATGGTATCCCGTCTGCAGGGACACTTACATCGACAGATTATCGGCCAGGTATGAAAGAGAGGGAGAGCCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTAGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTAGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAGATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTTTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCCAAGGCTCAAAAAACACCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATAGAGGGTAATGAAATTCCTCGGCTAGTCTATGTTTCCAGAGAGAAGAGACCCGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTTAGAGTATCAGCAGTTCTCACAAACGCTCCCTACATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGGGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGTCGAGATGTATGCTATGTTCAGTTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCTAACCGCAACACAGTTTTCTTTGATGTCAACATGAAAGGACTTGATGGCATCCAGGGACCAGTTTATGTAGGTACAGGTTGTGTCTTCAATAGACAGGCACTTTATGGCTACGGACCTCCTACTATGCCTAGCTTATCTAAGACGTCCTCATCATCCTGCTCATGGTGTGGCTGCTGTTCATGCTGCTGTCCTTTCAAGAAGGCCTCTAAAGATCCAACTGAGATTCAGCGAGATGCCAAAAGAGAAGAGCTCGATGCTGCGATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTATGAGAGGTCAATGCTGATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAGAGAAGCAATTCATGTCATTGGTTGTGGTTATGAAGAGAAGACTGCTTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCCTAACGGGTTTCAAGATGCACTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTCAAGGCCAGCATTCAAAGGATCAGCGCCAATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTATTGAGATTTTTTTCAGTAGACATTGTCCTTTGTGGTATGGATTTGCAGGAGGGCGGCTCAAATGGCTCCAAAGGATGGCATACATAAACACCATTGTTTATCCATTCACCTCCCTCCCTCTTGTTGCTTACTGTACATTGCCTGCAATCTGCCTCCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACCCTTTTTCTGGGTCTCTTCATGTCCATCATTCTCACCAGTGTCCTCGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATCTATGGCGTAACGAGCAATTCTGGGTCATAGGGGGCGTTTCTGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTGGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACACCGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACCCTCATTGTCATCAACATGGTCGGTGTCGTTGCAGGATTTTCTGATGCATTAAACGGTGGATATGAGGCCTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTTTGGGTGATTTTCCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCCGTGCTGTTGGCCTCAGTTTTCTCACTTGTTTGGGTGAAGATAAACCCATTTGTCAACCAAGTTGACGGTACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA | 4269 | 43.99 | MSEAPPRRLRGHKATATCCIASHDRPGLVATSGEDGCVCWFDMRCKDVVSIMEVGTEPISSICFKPGNEDVIYISSVKEIKSFDVHQATSSKPLGSYSYNKEEINQVSCSPKSSFLAAADDGGDVKIIDIHQQCLYKTLRSGHSSICSSVQFLPWRPWEVITGGLDSKLIIWDFSRGRPIKVLDFGSPDNNPSSNSGQCFNPAFIHAIAVPEVNMLDKLGQICVVARGDGVVDMIDIESEKSKVSTKGKRLQTRPKSKGVTAACDTDNQEETGRKNLHLDYTVGGHSAAVSCVTFSQFGEKGKFIVSGGNDKCIKLWNCSGVPDAGDAGRNNSLLHLNINLSKKVNWLCTTPSETENLIVCDTSKVVKMGETNFPTSRLFNYYPPFFRISKMFSSPSLTDLYHSSGLFLFHIKSPRKPRFWGCGDYLSFGVCRIRVRTKMMVSDVPICHNCGEQVGVDANGEVFVACHECHFHICKVCVQYDIKEGRKACLRCGAPFDENLLMDADTKMSGDRNTIASHLSHSQDAGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPSVKTEQEAQIPPQQQMEEKQISEQAAVEHTFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWYPVCRDTYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKRFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNEIPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTMPSLSKTSSSSCSWCGCCSCCCPFKKASKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIREAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPSRPAFKGSAPINLSDRLHQVLRWALGSIEIFFSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASTLFLGLFMSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTTLIVINMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDGTTVAQSCIAIDC | 1422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14170590 | 14183019 | + | MC03g0738 | Mch3g1060 | 683963 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g1060 | 1422 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 613 | 1389 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Mch3g1060 | 1422 | Pfam | WD domain, G-beta repeat | 138 | 173 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | Pfam | WD domain, G-beta repeat | 281 | 318 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | Pfam | WD domain, G-beta repeat | 7 | 42 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 283 | 318 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | SUPERFAMILY | RING/U-box | 438 | 514 | - | - | |
Mch3g1060 | 1422 | Gene3D | - | 207 | 377 | IPR015943 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | MobiDBLite | consensus disorder prediction | 554 | 585 | - | - | |
Mch3g1060 | 1422 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 160 | 174 | IPR019775 | - | |
Mch3g1060 | 1422 | SMART | WD40_4 | 276 | 318 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | SMART | WD40_4 | 45 | 84 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | SMART | WD40_4 | 132 | 173 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | SMART | WD40_4 | 2 | 42 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | SMART | WD40_4 | 90 | 129 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 708 | 1205 | IPR029044 | - | |
Mch3g1060 | 1422 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 140 | 182 | IPR001680 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 847 | 987 | IPR029044 | - | |
Mch3g1060 | 1422 | Pfam | Cellulose synthase | 694 | 1413 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Mch3g1060 | 1422 | Gene3D | - | 2 | 206 | IPR015943 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | FunFam | Cellulose synthase | 811 | 985 | - | - | |
Mch3g1060 | 1422 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 435 | 519 | IPR013083 | - | |
Mch3g1060 | 1422 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 283 | 318 | - | - | |
Mch3g1060 | 1422 | SUPERFAMILY | WD40 repeat-like | 7 | 368 | IPR036322 | GO:0005515(InterPro) | |
Mch3g1060 | 1422 | Pfam | Zinc-binding RING-finger | 446 | 498 | IPR027934 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1060 | Mch-Chr3:14170590 | Mch9g0011 | Mch-Chr9:86668 | 0 | dispersed | |
Mch3g1060 | Mch-Chr3:14170590 | Mch5g0065 | Mch-Chr5:443226 | 1.04E-90 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g1060 | K10999 | - | csv:101208988 | 2545.38 |