Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1060 ATGTCGGAGGCACCGCCGAGACGACTGAGGGGTCACAAAGCCACTGCAACGTGCTGCATCGCCTCGCATGACCGTCCTGGCCTTGTCGCTACTTCAGGCGAGGATGGTTGTGTTTGCTGGTTTGACATGAGATGCAAAGATGTCGTATCCATTATGGAAGTTGGAACAGAACCTATTTCATCCATATGTTTCAAGCCAGGGAATGAAGATGTTATTTACATCTCCTCCGTGAAGGAAATTAAGTCATTTGATGTCCATCAGGCCACATCATCGAAACCATTGGGGAGTTATAGTTACAACAAAGAGGAGATCAATCAGGTTTCTTGCAGCCCAAAATCTTCTTTTCTCGCTGCTGCCGATGATGGTGGTGATGTTAAGATCATTGACATTCACCAGCAATGCTTATATAAAACATTAAGATCTGGCCATTCGAGTATCTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCATGGGAAGTTATTACGGGAGGTCTTGATTCAAAGCTCATTATTTGGGACTTCTCCAGAGGGCGCCCCATCAAAGTACTTGATTTTGGTAGCCCGGACAACAACCCTTCCAGTAACTCTGGACAATGTTTTAATCCAGCATTTATTCATGCAATAGCGGTTCCTGAAGTTAATATGCTGGACAAATTGGGTCAGATATGTGTCGTGGCAAGGGGCGACGGTGTCGTGGACATGATTGATATTGAATCTGAGAAATCAAAGGTTTCTACAAAGGGTAAAAGATTACAAACAAGACCCAAGTCTAAGGGAGTTACTGCAGCTTGTGATACGGATAACCAAGAAGAAACTGGAAGAAAGAATTTACATTTGGATTACACTGTTGGTGGACATTCTGCTGCTGTGTCCTGTGTGACATTTTCTCAATTTGGGGAGAAAGGGAAGTTCATAGTATCTGGTGGGAATGATAAATGCATAAAGCTTTGGAATTGTTCTGGAGTTCCTGATGCTGGGGATGCAGGCAGAAACAACAGTCTTCTCCATTTGAACATCAATCTGAGCAAAAAGGTGAATTGGCTATGTACCACTCCATCTGAAACAGAAAACCTAATCGTTTGTGATACCAGTAAAGTAGTGAAGATGGGTGAAACCAACTTCCCAACCTCTCGTCTTTTCAACTACTACCCTCCATTCTTCCGCATTTCTAAAATGTTTTCATCGCCCTCTCTCACAGACCTATACCACTCATCTGGGTTGTTCCTTTTTCATATAAAATCACCCAGAAAACCTAGATTCTGGGGCTGCGGCGATTATCTTTCATTTGGGGTTTGCAGAATTCGAGTGAGAACAAAAATGATGGTGTCTGATGTCCCGATTTGCCACAACTGTGGTGAGCAAGTCGGAGTTGATGCCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCATATTTGCAAAGTCTGCGTCCAGTATGATATTAAGGAAGGCCGAAAAGCTTGCTTGCGGTGCGGGGCTCCATTTGACGAGAACTTACTGATGGATGCTGATACGAAGATGTCAGGAGATCGGAACACAATAGCATCTCATCTCAGTCATTCTCAGGATGCCGGAGTTCATGCTAGACATGTCAGTAGTGTGTCAACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTTCCGTGAAGACTGAACAAGAAGCTCAAATTCCACCTCAACAACAAATGGAGGAGAAACAGATTTCAGAGCAGGCTGCAGTTGAACACACATTTTCTTCAGTTTATCCAATTCCATCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAATATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATTATATGTGAAATCTGGTTTGCCTTCTCTTGGGTGTTGGATCAGTTCCCTAAATGGTATCCCGTCTGCAGGGACACTTACATCGACAGATTATCGGCCAGGTATGAAAGAGAGGGAGAGCCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTAGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTAGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAGATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTTTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCCAAGGCTCAAAAAACACCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATAGAGGGTAATGAAATTCCTCGGCTAGTCTATGTTTCCAGAGAGAAGAGACCCGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTTAGAGTATCAGCAGTTCTCACAAACGCTCCCTACATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGGGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGTCGAGATGTATGCTATGTTCAGTTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCTAACCGCAACACAGTTTTCTTTGATGTCAACATGAAAGGACTTGATGGCATCCAGGGACCAGTTTATGTAGGTACAGGTTGTGTCTTCAATAGACAGGCACTTTATGGCTACGGACCTCCTACTATGCCTAGCTTATCTAAGACGTCCTCATCATCCTGCTCATGGTGTGGCTGCTGTTCATGCTGCTGTCCTTTCAAGAAGGCCTCTAAAGATCCAACTGAGATTCAGCGAGATGCCAAAAGAGAAGAGCTCGATGCTGCGATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTATGAGAGGTCAATGCTGATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAGAGAAGCAATTCATGTCATTGGTTGTGGTTATGAAGAGAAGACTGCTTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCCTAACGGGTTTCAAGATGCACTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTCAAGGCCAGCATTCAAAGGATCAGCGCCAATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTATTGAGATTTTTTTCAGTAGACATTGTCCTTTGTGGTATGGATTTGCAGGAGGGCGGCTCAAATGGCTCCAAAGGATGGCATACATAAACACCATTGTTTATCCATTCACCTCCCTCCCTCTTGTTGCTTACTGTACATTGCCTGCAATCTGCCTCCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACCCTTTTTCTGGGTCTCTTCATGTCCATCATTCTCACCAGTGTCCTCGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATCTATGGCGTAACGAGCAATTCTGGGTCATAGGGGGCGTTTCTGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTGGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACACCGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACCCTCATTGTCATCAACATGGTCGGTGTCGTTGCAGGATTTTCTGATGCATTAAACGGTGGATATGAGGCCTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTTTGGGTGATTTTCCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCCGTGCTGTTGGCCTCAGTTTTCTCACTTGTTTGGGTGAAGATAAACCCATTTGTCAACCAAGTTGACGGTACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA 4269 43.99 MSEAPPRRLRGHKATATCCIASHDRPGLVATSGEDGCVCWFDMRCKDVVSIMEVGTEPISSICFKPGNEDVIYISSVKEIKSFDVHQATSSKPLGSYSYNKEEINQVSCSPKSSFLAAADDGGDVKIIDIHQQCLYKTLRSGHSSICSSVQFLPWRPWEVITGGLDSKLIIWDFSRGRPIKVLDFGSPDNNPSSNSGQCFNPAFIHAIAVPEVNMLDKLGQICVVARGDGVVDMIDIESEKSKVSTKGKRLQTRPKSKGVTAACDTDNQEETGRKNLHLDYTVGGHSAAVSCVTFSQFGEKGKFIVSGGNDKCIKLWNCSGVPDAGDAGRNNSLLHLNINLSKKVNWLCTTPSETENLIVCDTSKVVKMGETNFPTSRLFNYYPPFFRISKMFSSPSLTDLYHSSGLFLFHIKSPRKPRFWGCGDYLSFGVCRIRVRTKMMVSDVPICHNCGEQVGVDANGEVFVACHECHFHICKVCVQYDIKEGRKACLRCGAPFDENLLMDADTKMSGDRNTIASHLSHSQDAGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPSVKTEQEAQIPPQQQMEEKQISEQAAVEHTFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWYPVCRDTYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKRFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNEIPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTMPSLSKTSSSSCSWCGCCSCCCPFKKASKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIREAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPSRPAFKGSAPINLSDRLHQVLRWALGSIEIFFSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASTLFLGLFMSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTTLIVINMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDGTTVAQSCIAIDC 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14170590 14183019 + MC03g0738 Mch3g1060 683963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1060 1422 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 613 1389 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Mch3g1060 1422 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 Pfam WD domain, G-beta repeat 281 318 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 Pfam WD domain, G-beta repeat 7 42 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 318 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 SUPERFAMILY RING/U-box 438 514 - -
Mch3g1060 1422 Gene3D - 207 377 IPR015943 GO:0005515(InterPro)
Mch3g1060 1422 MobiDBLite consensus disorder prediction 554 585 - -
Mch3g1060 1422 ProSitePatterns Trp-Asp (WD) repeats signature. 160 174 IPR019775 -
Mch3g1060 1422 SMART WD40_4 276 318 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 SMART WD40_4 45 84 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 SMART WD40_4 132 173 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 SMART WD40_4 2 42 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 SMART WD40_4 90 129 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 SUPERFAMILY Nucleotide-diphospho-sugar transferases 708 1205 IPR029044 -
Mch3g1060 1422 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 182 IPR001680 GO:0005515(InterPro)
Mch3g1060 1422 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 847 987 IPR029044 -
Mch3g1060 1422 Pfam Cellulose synthase 694 1413 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Mch3g1060 1422 Gene3D - 2 206 IPR015943 GO:0005515(InterPro)
Mch3g1060 1422 FunFam Cellulose synthase 811 985 - -
Mch3g1060 1422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 519 IPR013083 -
Mch3g1060 1422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 318 - -
Mch3g1060 1422 SUPERFAMILY WD40 repeat-like 7 368 IPR036322 GO:0005515(InterPro)
Mch3g1060 1422 Pfam Zinc-binding RING-finger 446 498 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1060 Mch-Chr3:14170590 Mch9g0011 Mch-Chr9:86668 0 dispersed
Mch3g1060 Mch-Chr3:14170590 Mch5g0065 Mch-Chr5:443226 1.04E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1060 K10999 - csv:101208988 2545.38