Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1072 ATGGAGAAAAAGGGTGCCATTCTGATGCAGAGGTACGAGCTCGGGAGGTTGCTTGGGCAGGGGACCTTTGCCAAAGTGTACCATGCCCGGAACCTCCACACGGGCCAGAGCGTGGCCATCAAAATCATTGACAAGGAGAAGGTTCTGCGTGTGGGGCTCATCGACCAAATCAAGAGGGAGATCTCTGTGATGCGCCTCGTGCGCCACCCCAATGTGGTGCAGCTCTACGAGGTGATGGCCAGCAGGACCAAGATCTACTTCGTCATGGAGTATGTCAAGGGTGGGGAACTCTTCAACAAAGTGGCTAAGGGGAGGCTCAAGGAAGACGCCGCTCGTAAGTACTTCCAGCAGCTCATTGGCGCTGTTGATTACTGCCATAGCCGCGGAGTCTACCACAGAGATCTCAAGCCTGAGAATCTCCTTCTTGACGAATTTGGGAATCTCAAGATTTCGGATTTCGGATTGAGTGCGTTGGCCGAGTCTCGGCGGCAGGATGGCCTTCTCCATACCACCTGTGGAACCCCTGCCTATGTCGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGTGCCAAAGCTGATATTTGGTCTTCTGGGGTTGTCCTGTTTGTTCTGCTGGCGGGTTTCCTCCCATTCCACGACCCAAATCTGATGGAAATGTACAGGAGAATTTCCAGAGGAGAATTCAAATGCCCTCAATGGTTTCCTCCCGAAGTGCGCAAGCTTCTCTCAAGAATCCTCGACCCAAGTCCCCACACCAGAATAAACATGGCCAAACTCATGGACAATTCTTGGTTCAAGAAGGGCTTCAAAGCCAATGTAGCAACTCCCAAACCACTTCGAATCAATGGAGATGTGTCGTCATCGGTAAGCGACGTCCACGCCGCTTTCGACGACATTAGTTCCGAGGAAGGGTCGATTAATGGCAATAACAATGAGAGCGGAAAGCCACCGACCAGAAACTCTAGTTTCAATGCCTTTGACATCATATCTCTGTCGCCGGGGTTCGACCTGTCGGGTCTGTTCGAGAGCGACGTGGATCAGAGGCTGCAGTCGAGATTCACGACCGCGAAACCAGCATCGGCGATCGTGTCGAAGTTCGAGGAAATAGCGGAGATGGAGAGGTTCAAGGTGTTGAAGAAGGATGGGATAGTGAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGGGAGCTGGCTATAGATGCTGAGATATTTGAAGTGACACCTTCTTTTTTTGTGGTGGAGGTGAAGAAAACTGCTGGGGACACTTTGGAATACAGGCAATTTTACAACAAAGACATAAGGCCTTGCCTCAAGGATATTGTGTGGACTTGGGAAGGAAATGAGCAGCAGCAGCAACAGCAACCACAACCACAAATTGTTTAG 1386 50.94 MEKKGAILMQRYELGRLLGQGTFAKVYHARNLHTGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFVMEYVKGGELFNKVAKGRLKEDAARKYFQQLIGAVDYCHSRGVYHRDLKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGFLPFHDPNLMEMYRRISRGEFKCPQWFPPEVRKLLSRILDPSPHTRINMAKLMDNSWFKKGFKANVATPKPLRINGDVSSSVSDVHAAFDDISSEEGSINGNNNESGKPPTRNSSFNAFDIISLSPGFDLSGLFESDVDQRLQSRFTTAKPASAIVSKFEEIAEMERFKVLKKDGIVKLQGSKQGRKGELAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYNKDIRPCLKDIVWTWEGNEQQQQQQPQPQIV 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14233192 14235305 - MC03g_new0326 Mch3g1072 683975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1072 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1072 461 CDD CIPK_C 325 439 - -
Mch3g1072 461 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 436 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch3g1072 461 MobiDBLite consensus disorder prediction 303 321 - -
Mch3g1072 461 Pfam NAF domain 322 380 IPR004041 GO:0007165(InterPro)
Mch3g1072 461 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1072 461 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Mch3g1072 461 MobiDBLite consensus disorder prediction 301 321 - -
Mch3g1072 461 SUPERFAMILY Protein kinase-like (PK-like) 8 308 IPR011009 -
Mch3g1072 461 FunFam Non-specific serine/threonine protein kinase 319 443 - -
Mch3g1072 461 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Mch3g1072 461 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1072 461 Gene3D Kinase associated domain 1, KA1 319 444 - -
Mch3g1072 461 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165(InterPro)
Mch3g1072 461 FunFam Non-specific serine/threonine protein kinase 2 297 - -
Mch3g1072 461 Gene3D Transferase(Phosphotransferase) domain 1 3 314 - -
Mch3g1072 461 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1072 461 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0797 Mch-Chr2:5493232 Mch3g1072 Mch-Chr3:14233192 2.15E-204 dispersed
Mch3g1072 Mch-Chr3:14233192 Mch8g2989 Mch-Chr8:32521646 2.10E-191 dispersed
Mch8g3227 Mch-Chr8:34329790 Mch3g1072 Mch-Chr3:14233192 1.23E-26 dispersed
Mch1g1930 Mch-Chr1:19151726 Mch3g1072 Mch-Chr3:14233192 9.84E-183 transposed
Mch1g1929 Mch-Chr1:19138422 Mch3g1072 Mch-Chr3:14233192 2.14E-20 wgd
Mch2g0655 Mch-Chr2:4483637 Mch3g1072 Mch-Chr3:14233192 4.45E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77258 PF00069 Pkinase 1.10E-72 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1072 K07198 - csv:101206082 796.193