Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1085 ATGGCAGAGAGAAAGATGAACAAAAATCAAGATGATGGGGCTGGAATTAAGCTTTTTGGGGCAACAATTTTGCTGCAGAGCAGGCAAGTAGTGAAAGAAGAGGCTGATCAACAAACGCCGGAAAAAAAGCCGGCGCCGGCGCCGGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTATTTCAATAATTATAATGTCAATCAGCCAAGGCATTTCTGTAAGGGCTGTCAGAGGTACTGGACCGCCGGCGGAGCACTCCGCAACGTCCCCGTCGGAGCTGGCCGCCGCAAGACCAAGCCGCCCTGCCGGACCTTTTCTGGGTTGCCGGATAATTGCGTCTTTGACTCTTCTGGGATGGTCGCCGCGGCGGTGCAGCAGTTTGAATTGGACGGCATGGTGGACGAGTGGCATGTCGTCGCCGCAGACGGCGGTTTCCGGCGAATTTTGCCAGTCAAGAGGCGGAGGGATTGCCAAGACGGTCAAACCTGT 507 53.85 MAERKMNKNQDDGAGIKLFGATILLQSRQVVKEEADQQTPEKKPAPAPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAADGGFRRILPVKRRRDCQDGQTC 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14318720 14319226 + MC03g0754 Mch3g1085 683988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1085 169 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch3g1085 169 PANTHER CYCLIC DOF FACTOR 2 32 106 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Mch3g1085 169 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch3g1085 169 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1085 Mch-Chr3:14318720 Mch8g1769 Mch-Chr8:17308233 2.01E-34 dispersed
Mch1g1938 Mch-Chr1:19214808 Mch3g1085 Mch-Chr3:14318720 5.84E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43034 PF02701 zf-Dof 5.50E-32 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1085 - - - 0.0