Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1106 ATGCTTATTACACTCTTCTTCTTCGTCTTCCTCGCGAACCCTAGCCTTCTCTCGCTCTCTCTGACTCAGGAGGGCCTCTACCTCCATACCATTAAGCTCTCCCTCGACGATCCCGACTCCGCCCTCCGATCATGGAACGATCGCGACGATTCTCCCTGCGCCTGGTTCGGCGTCTCCTGCGACCCTAATACCGGCGCCGTTTACTCCCTCGACCTCTCCAACACCAACGTCGCCGGCCCATTTCCCTCCCTCATTTGCCGCCTCCGCAATCTCTCCTTTCTTTCCCTCTTCAACAACTCCATTAACATGACTCTTCCCTCTGCTATCTCTGAGTGTACCAGTCTCCACCACATCGACCTCGCTCAGAATCTCCTCACCGGCGCTCTTCCGAGCTCTCTCGCCGATCTACCCAACCTCCGGTATCTGGATTTGACGGGCAATAACTTTTCCGGCGACATTCCGGCGAGTTTCGCTCGGTTTCCGAAGCTGGAGGTTCTGTCTCTTGTTTACAATCTTCTTGATGGGCCGGTGCCGGCGTTTCTCGGCAACATTACGTCTCTGAAAATGCTGAACCTCTCTTACAATCCGTATACGCCGAGTCGGATCCCGCCGGAGCTCGGGAATTTGACGAATCTTGAGGTGCTTTGGTTGACGCAATGTAATTTGGTGGGCGAAATTCCGCACTCTCTTGGTCGGTTAAAACGACTCACCGATTTGGACTTGGCGCTTAATAATCTCTACGGTCCGATTCCGAGGTCGCTCACTGAGTTGGTAAACGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGAGAGTTGCCGCCGGGTTTTTCGAATCTCACCTCATTGCGACTGTTTGACGCGTCGATGAACGGGTTGACTGGGCCGATTCCGGAAGAGTTGTGTCAGTTGCCGCTCGAGAGTCTCAATCTCTACGAGAACAAGTTCGAGGGAAAGTTACCTGGAAGCATTGCGAATTCGCCGGGATTGTACGAACTCAGGCTGTTCAGTAACCGGCTTACCGGCGAGTTACCGAGAAATCTTGGAAAGAACTCGCCGTTAAGATGGATCGACGTTTCAGACAACCAGTTTTCAGGCGAAATCCCGGAGTATTTGTGCGAGAAGGGAGAGTTGGAGGAGCTACTGATGATTAACAACCAGTTTTCCGGGCTACTTCCGTCGGGTCTAGGTGAGTGCGAGAGTCTGACTCGGGTGAGGTTGGGTTACAATCGGTTATCCGGCGAGGTACCGGCCGGATTTTGGGGGCTACCACATGTGTATCTGCTGGAGCTGGTGAGTAACTCGTTCTCTGGAAAGATTTCTGATACAATTGCCACTGCGAGGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGAACTATTCCGGCAGACCTGGGGCAGTTGAATAATCTTGTGAAGTTTTTAGCGACTGATAACAAACTCGACGGATCGTTACCAGGGAGTCTTGTGAATCTCAGACACCTTTCGAGTTTGAATCTTCGAAATAATGAACTCTCTGGTGAACTTCCCAGTGGAATCAAGTCCTGGAAGAATCTCAACGAACTCAACTTAGCCGACAACGAATTTACCGGTGAAATCCCTGAAGAAATTGGGAACTTGCCCGTTCTTAATTACCTTGATCTGTCCGGAAATCTGTTTTCTGGGGACATCCCGCTTGGGTTTCAGAATTTGAAACTCAATGTGCTCAATTTATCAAACAATCACTTATCAGGTGATCTCCCTCCGTTTTTAGCCAAAGAAAACTACAGAAATAGCTTTTTGGGAAATCCAGGTATATGTGGAAATTTTGAAAGTTTGTGCAACAGTAAAGGTGAAGCAAAAAGTGAAGGCTATCTCTGGTTGCTGCGATCGATCTTCTTCCTAGCTGGTATCGTGTTTATCGTCGGCGTTGTATGGTTTTACCTCAAATACAGAAAGTTTAGGATGGCGAAGAAAGAAATGGAGAAGGGAAAGTGGACACGGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGATTGCCTTGATGAAGACAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAGGTTGTTCTCAACAATGGGGAAGCTGTGGCCGTGAAGAAGCTGTTTGGAGGGATGAGGAAAGAAGGCGAAAAAGGCGATGTTGAGAAGGGTCAAGTTCAAGACGACGGCTTCGAAGCAGAAATCGATACTCTGGGTAAGATTAGGCACAAGAACATTGTGAAGTTATGGTGTTGCTGTATTACCAGAGACTACAAGCTTTTGGTATATGAATATATGTCTAATGGAAGCTTGGGAGATCTGCTTCACAGTAGTAAGAAAGGACTGTTAGATTGGCCTACAAGGTTTAAGATAGCTTTGGATGCTGCAGAAGGGCTTTCTTACCTTCACCACGACTGTGTCCCTCCGATTGTACACCGAGATGTCAAGTCTAACAATATCTTGTTGGATGGAGATTTTGGGGCGCGGTTGGCTGATTTCGGTGTAGCTAAGGTCATCGATTCATCTGGGAAGGGGCCTAAATCCATGTCTGTCATTGCAGGATCTTGTGGTTACATCGCCCCTGAGTATGCTTATACACTCCGAGTAAACGAGAAGAGCGACATATACAGTTTCGGCGTGGTCATCCTCGAGCTAGTCACCGGGAGGCTCCCAATCGATCCTGAGTTTGGGGAGAAAGACTTGGTGAAATGGGTATGCTTCACATTAGATCAAGACGGGATTGACAAGGTTATAGACTCGAAATTGGAGAGTTGTTTCAAGGAAGAAATATGCAGAGTCCTCCAAATTGGGCTGGTGTGCACCAGCCCTCTCCCCATCAACCGCCCATCAATGAGAAAAGTAGTAAAAATGCTGCAAGAAGTTGGTGCAGAGAACCAGTTAAAAACCTTCACTAAAGATGGGAAGTTAACTCCTTACTATTACGAAGATGCTTCAGATCAGGGAAGTGTAGCATAG 2988 47.69 MLITLFFFVFLANPSLLSLSLTQEGLYLHTIKLSLDDPDSALRSWNDRDDSPCAWFGVSCDPNTGAVYSLDLSNTNVAGPFPSLICRLRNLSFLSLFNNSINMTLPSAISECTSLHHIDLAQNLLTGALPSSLADLPNLRYLDLTGNNFSGDIPASFARFPKLEVLSLVYNLLDGPVPAFLGNITSLKMLNLSYNPYTPSRIPPELGNLTNLEVLWLTQCNLVGEIPHSLGRLKRLTDLDLALNNLYGPIPRSLTELVNVVQIELYNNSLTGELPPGFSNLTSLRLFDASMNGLTGPIPEELCQLPLESLNLYENKFEGKLPGSIANSPGLYELRLFSNRLTGELPRNLGKNSPLRWIDVSDNQFSGEIPEYLCEKGELEELLMINNQFSGLLPSGLGECESLTRVRLGYNRLSGEVPAGFWGLPHVYLLELVSNSFSGKISDTIATARNLSIFIISKNNFTGTIPADLGQLNNLVKFLATDNKLDGSLPGSLVNLRHLSSLNLRNNELSGELPSGIKSWKNLNELNLADNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDIPLGFQNLKLNVLNLSNNHLSGDLPPFLAKENYRNSFLGNPGICGNFESLCNSKGEAKSEGYLWLLRSIFFLAGIVFIVGVVWFYLKYRKFRMAKKEMEKGKWTRMSFHKLDFSEYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKEGEKGDVEKGQVQDDGFEAEIDTLGKIRHKNIVKLWCCCITRDYKLLVYEYMSNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSSGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPIDPEFGEKDLVKWVCFTLDQDGIDKVIDSKLESCFKEEICRVLQIGLVCTSPLPINRPSMRKVVKMLQEVGAENQLKTFTKDGKLTPYYYEDASDQGSVA 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14458785 14463239 - MC03g0773 Mch3g1106 684009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1106 995 SUPERFAMILY L domain-like 307 588 - -
Mch3g1106 995 SMART LRR_typ_2 88 112 IPR003591 -
Mch3g1106 995 SMART LRR_typ_2 136 159 IPR003591 -
Mch3g1106 995 SMART LRR_typ_2 544 567 IPR003591 -
Mch3g1106 995 SMART LRR_typ_2 209 233 IPR003591 -
Mch3g1106 995 SMART LRR_typ_2 257 280 IPR003591 -
Mch3g1106 995 SMART LRR_typ_2 496 519 IPR003591 -
Mch3g1106 995 FunFam Receptor-like protein kinase HSL1 306 613 - -
Mch3g1106 995 FunFam Leucine-rich receptor-like protein kinase family protein 202 300 - -
Mch3g1106 995 Pfam Leucine Rich Repeat 355 374 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 Pfam Leucine Rich Repeat 261 281 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 Pfam Leucine Rich Repeat 307 327 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 Pfam Leucine Rich Repeat 569 589 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 Gene3D Ribonuclease Inhibitor 186 257 IPR032675 -
Mch3g1106 995 Gene3D Ribonuclease Inhibitor 258 327 IPR032675 -
Mch3g1106 995 Gene3D Ribonuclease Inhibitor 21 180 IPR032675 -
Mch3g1106 995 SUPERFAMILY Protein kinase-like (PK-like) 674 962 IPR011009 -
Mch3g1106 995 ProSiteProfiles Protein kinase domain profile. 682 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1106 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1106 995 PANTHER RECEPTOR-LIKE PROTEIN 55 67 195 - -
Mch3g1106 995 SUPERFAMILY L domain-like 31 370 - -
Mch3g1106 995 SMART serkin_6 682 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1106 995 Gene3D Transferase(Phosphotransferase) domain 1 770 985 - -
Mch3g1106 995 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Mch3g1106 995 Gene3D Ribonuclease Inhibitor 328 614 IPR032675 -
Mch3g1106 995 Gene3D Phosphorylase Kinase; domain 1 645 769 - -
Mch3g1106 995 Pfam Protein kinase domain 685 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1106 995 Pfam Leucine rich repeat 89 149 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 Pfam Leucine rich repeat 497 556 IPR001611 GO:0005515(InterPro)
Mch3g1106 995 FunFam Receptor-like protein kinase HSL1 666 769 - -
Mch3g1106 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 184 - -
Mch3g1106 995 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524(InterPro)
Mch3g1106 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 770 979 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1106 Mch-Chr3:14458785 Mch4g0284 Mch-Chr4:1818025 1.98E-191 dispersed
Mch1g1897 Mch-Chr1:18919743 Mch3g1106 Mch-Chr3:14458785 9.46E-173 wgd
Mch3g1106 Mch-Chr3:14458785 Mch4g2509 Mch-Chr4:25804281 1.13E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77260 PF00069 Pkinase 3.10E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1106 - - - 0.0