Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1143 ATGAGCTGCATCTGCTTCGGTTCCTCTACTGTGGAGAGGAAACGGATCTCTACGCGTGCTGATAAGGAGATGGACGTTGACTTGCTTGAGAATGTTAAACAATTCTCCTTCAATGAACTAAGATCTGCTACAGAGGATTTCCATTTGGACAATAGAATTGGACGTGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAGTGGAGTACAAGTAGCGATAAAGAAACTTTCCACAGAGTCTAAGCAAGGGGCTCGGGAATTTTTGACAGAGATCCAAACCATTTCAAATGTCCGGCATACAAACCTTGTTGAGTTGGTTGGATGCTGTTCCCAAAAAGCTAACCGGATTTTGGTCTATGAATATCTGGAAAATAACAGTCTTGACCATGCTTTGTTAGATCCTAAGAATAAAAGTGTCAAACTGGATTGGGGGAAGAGGTCCTCTATTTGCATTGGTACTGCTAGGGGCCTTCAATTTCTTCACGAGGAACTTGTTCCACATATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATGGGGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCCGGAACTACAGGTTATTTGGCTCCGGAGTATGCATTGGGAGGTCAGCTAACGTTGAAGGCTGATGTGTATAGCTTTGGAGTCCTCATACTTGAAATAGTTAGTGGTAGACGTAGCGGTACAGCTTTCGGGGGAGAAATACCAAAACTCTTGCTGGAACGGGTGTGGGAGTTATACGAAGAAGGTAAACTCTTAGATATAGTGGATCCAAGACTAGGAGACTATCCTCAGGAAGAAGTGGTTAGGTACATGAAGGTGGCTCTTCTCTGCACCCAAGCGGCTGCAAAACGACGGCCAGTGATGAGTCAAGTCCTCGACATGCTTACAAAGAAGATCAAGCTTAACGAGAAGCTACTTACCGCCCCGGGATTCTACGGAGGCTCGGGGCTTAGCGACATTCCTTCTGTAAGCAAGAAGACCTCCAACACTTCCACTAGCAACGAGATTAGCTCTGCTGTTATCTCTATAACTCAAATCACCCCTAGATGA 1116 44.35 MSCICFGSSTVERKRISTRADKEMDVDLLENVKQFSFNELRSATEDFHLDNRIGRGGFGTVYKGTLRSGVQVAIKKLSTESKQGAREFLTEIQTISNVRHTNLVELVGCCSQKANRILVYEYLENNSLDHALLDPKNKSVKLDWGKRSSICIGTARGLQFLHEELVPHIVHRDIKASNILLDGDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLILEIVSGRRSGTAFGGEIPKLLLERVWELYEEGKLLDIVDPRLGDYPQEEVVRYMKVALLCTQAAAKRRPVMSQVLDMLTKKIKLNEKLLTAPGFYGGSGLSDIPSVSKKTSNTSTSNEISSAVISITQITPR 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14723519 14731117 + MC03g0805 Mch3g1143 684046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1143 371 SMART serkin_6 47 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1143 371 CDD STKc_IRAK 53 319 - -
Mch3g1143 371 Pfam Protein tyrosine and serine/threonine kinase 48 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1143 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1143 371 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Mch3g1143 371 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Mch3g1143 371 FunFam cold-responsive protein kinase 1 18 122 - -
Mch3g1143 371 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Mch3g1143 371 ProSiteProfiles Protein kinase domain profile. 47 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1143 371 SUPERFAMILY Protein kinase-like (PK-like) 28 317 IPR011009 -
Mch3g1143 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 352 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Mch3g1143 371 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0796 Mch-Chr1:11590267 Mch3g1143 Mch-Chr3:14723519 3.77E-110 dispersed
Mch3g1143 Mch-Chr3:14723519 Mch5g1926 Mch-Chr5:19192939 1.15E-141 dispersed
Mch3g1143 Mch-Chr3:14723519 Mch10g0989 Mch-Chr10:7067822 3.87E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77263 PF07714 PK_Tyr_Ser-Thr 2.70E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1143 - - - 0.0