Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1172 GTTCTTTTTTTCTGCAGTGGGGGTAGCCTTGTAGCATATGCTGATGCTAGTCCAATAAATGTTGCACCCAGCACCAGCATTGCATCATTTAAAGCGGACGTCGATGAAAAAAAGAAGAAGGTGGTAGTACTTGGAACTGGTTGGGCCGGAACAAGTTTCTTGAAGAACATTAAAGATGCCTCATATGAGATTCAAGTGATATCCCCTCGTAATTACTTTGCATTCACCCCATTATTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGCAGCATTGTTGAACCGATTCGCAACATTGTGAGGAAGAAAGGGGTAGACATCATATTCAATGAAGCGGAATGTTACAAGATTGATGCTGAAAATAGAAAGCTCTATTGTCGATCTAATGCAAATAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTACGACTACCTAGTGATAGCTGTGGGAGCACAAGTTAATACTTTCAATACTCCTGGTGTCGTGGAGAATTGCCACTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTACCTACCCTTAATGAAGAAGATAGAAAGAGAATTCTTCACTTTGCTGTTGTTGGTGGTGGCCCAACTGGTGTGGAATTCGCTGCAGAACTTCATGATTTTGTCAATGAAGACTTGGTCAAATTATATCCTGGACTAAAAGATTTTGTAAAAATTACTCTTCTCGAGGCAGGGGATCATATTTTGAACATGTTCGACAAAAGAATTACAACTTTTGCTGAAGAAAAATTCCGAAGAGATGGTATTGATGTTAAGACAGGATCAATTGTGATCAAGGTAACTGATAAAGAGATTTCTACCAAAGAAATGAAGAGTGGAGAAGTATCTTCCATGCCCTATGGCATGACAGTATGGTCAACCGGTATTGGAACTCGTCCAATCATAAAGGACTTTATGACACAGATTGGTCAGGTTAACAGGCGTGCTTTAGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATGTATATGCAATTGGTGATAGTGCCACCATAAATCAGCGAAGAGTCATGGAAGATATTGCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTAACTGTAAAAGAATTTCAAGAAGTCATTAATGACATATGTGAAAGATATCCCCAGGTGGAGCTGTATTTGAAGAATAAGCAGATGCACAACATCGTTGATCTTTTGAAAGGATCCAAAGGGGATGTGGCAAAGGAGTCCATCGAATTAAACATTGAAGAGTTTAAATTAGCTCTTTCCCAAGTCGATTCTCAAATGAAAAATCTTCCTGCCACCGCACAGGTGGCTGCCCAGCAAGGTGCATATCTTGCCAAATGTTTTAACCGCATGGAAGAGTGCGAACAAAATCCTGAAGGTCCTCTTAGGTTTAGGGGAACAGGACGCCACCGTTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCGTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGGGCATTAGTGGTTACAGATTGGACGAGACGTTTCGTTTTTGGCAGGGATTCGAGTCGCATATGA 1692 42.14 VLFFCSGGSLVAYADASPINVAPSTSIASFKADVDEKKKKVVVLGTGWAGTSFLKNIKDASYEIQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKGVDIIFNEAECYKIDAENRKLYCRSNANNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKRILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLKDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSIVIKVTDKEISTKEMKSGEVSSMPYGMTVWSTGIGTRPIIKDFMTQIGQVNRRALATDEWLRVEGCDNVYAIGDSATINQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVINDICERYPQVELYLKNKQMHNIVDLLKGSKGDVAKESIELNIEEFKLALSQVDSQMKNLPATAQVAAQQGAYLAKCFNRMEECEQNPEGPLRFRGTGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14961359 14965721 + MC03g0833 Mch3g1172 684075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1172 563 PRINTS FAD-dependent pyridine nucleotide reductase signature 144 162 - -
Mch3g1172 563 PRINTS FAD-dependent pyridine nucleotide reductase signature 41 60 - -
Mch3g1172 563 PRINTS FAD-dependent pyridine nucleotide reductase signature 205 223 - -
Mch3g1172 563 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 407 562 - -
Mch3g1172 563 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Mch3g1172 563 Pfam NDH2 C-terminal domain 498 559 IPR054585 -
Mch3g1172 563 SUPERFAMILY FAD/NAD(P)-binding domain 38 257 IPR036188 -
Mch3g1172 563 SUPERFAMILY EF-hand 357 449 IPR011992 -
Mch3g1172 563 Gene3D - 30 375 - -
Mch3g1172 563 Gene3D - 407 562 - -
Mch3g1172 563 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509(InterPro)
Mch3g1172 563 PANTHER NADH DEHYDROGENASE 35 563 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Mch3g1172 563 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 30 390 - -
Mch3g1172 563 SMART efh_1 365 393 IPR002048 GO:0005509(InterPro)
Mch3g1172 563 Pfam Pyridine nucleotide-disulphide oxidoreductase 39 363 IPR023753 GO:0016491(InterPro)
Mch3g1172 563 SUPERFAMILY FAD/NAD(P)-binding domain 197 358 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1834 Mch-Chr1:18437797 Mch3g1172 Mch-Chr3:14961359 1.98E-65 dispersed
Mch9g1876 Mch-Chr9:20444378 Mch3g1172 Mch-Chr3:14961359 4.73E-06 transposed
Mch2g0589 Mch-Chr2:4066076 Mch3g1172 Mch-Chr3:14961359 5.60e-312 wgd
Mch3g1172 Mch-Chr3:14961359 Mch4g0180 Mch-Chr4:1210582 3.59E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1172 K03885 - csv:101204145 1045.03