Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1179 ATGAGACTTCAAACGGATTGGAGATTTTCACTTCGTTTTCTTCTTCTTCTTCTTTCATTTTGCTACGGCAGATCAGATACCATCACATCAACAAATTTCATCAAAGACCCTGCAACTATAGCTTCCAATGGCAGTACCTTCAAGTTGGGATTTTTCTCACCTTTAAATTCTACCCGCCGATATGTCGGAATTTGGCTCAACAACATTTCCGTACAAACTATAGTATGGGTAGCCAACAGAGACAGCCCTCTGAACGACACTTCTGGGATCTTCACAATCTCAAAGGATGGGAATCTTGTGGTGTTGGATGGAAACGACACCGTCCTCTGGTCTTCAAATGTTTCTTCTCCTTTAGTGAACACAAGCGCCCAAATTTTAGATACCGGTAACCTCATTTTGCAAGATGCTGTTTCCGGGTTTGTTATATGGGAGAGTTTCCAACACCCTTCTAATGTATTCCTGTATTCCATGAAACTTATCACAAACAAAGACATGAACTCCAAAGACAAGGTTCAGCTTACCTCTTGGAAAAACCCTTCAGATCCATCTACAGGAAACTTTTTGTTTGGGCTGGATGTTCAATATCTTCCAGAATTGGTGATTTGGAATGGCCGTAATCCTTATTGGCGGTCTGGTCCATGGAACGGTAATACTTTTATCGGAAGACCCGAAATGACTGATATTTATCTCTCAGGATATAATCTTGTAATCGGAGACAACACCTACACTCTCTCTACTCCTTATCGTAGTGTTGATATGCAAGAATATGAATTTTTATCTTTGAGCTCACAAGGGAATTGGGAGCAGAAGTACTGGGATGCTAAGGAGGCGCAGTTGAAGAATTATTGGTCGGCTCTAGGAACGCAGTGTGATTTTTATGGTGCTTGTGGGACGGCTGGGATTTGTGATGTGAAAGCGTCCCCTGTTTGCAGCTGTATAAAAGGGTTTAAGCCAAAGCATGAAGAGGAATGGAATAAAGGAAATTGGAGCAGGGGATGTGTGAGAAAGACGCCATTGAATTGTACTCACAACTCCAACAACGCCACCGCTGAGGCTGCAGATGGGTTTTTTAAATTGGAAACGATTAAACTGCCATTTCTTGAACAGTGGTCCAATGCCTCTTACTATGAAGACGAATGCAGACAAGAGTGCTTCACCAATTGTTCTTGTACTGCTTATGCATTTGAAAAAGGTATTGGTTGTATGCTATGGAGAAGGGATGATTTAATTGATATACAAAAGTTTGAGAGTGGTGGAGCTGATCTTTATCTTCGAATGGCGTATGCAGACTTGGATCATACTACAAATCAGGTAAAAGACAAGAAACGAATTATTATAGCCATAGTGCTACCAGGAACGTTTATCATCTTCATTACCATTGCCATATACTTTTGGTGGAGATTGAAGACTCACAAACATGAGAAGAAGACAAGTATCAAATCCAGCAAAAAGGGAAAGATTTTGAAATGCACAAGGGATGATGATACGATTGGGGATGAAATTGAACTCGAAGAGTTGCCTCTTTATGATTTTGAAGAGCTGGCAATTGCAACAAACAACTTTGATTTAAGTAACCAGCTTGGGCAGGGTGGCTTTGGTCCAGTATATAAGGGAAAATTATTAAATGGACAGGAAATAGCAATAAAGAGACTTTCAAGAACATCTAACCAAGGGTACGAAGAATTTATAACTGAAGTGAAAGTGATTTCAAAATTACAACATAGGAATCTTGTGCAGCTTCTCGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTAATATATGAGTATATGGCCAATGGAAGTTTGGATGCGATGATATTTGACTCCTCCAAACAAAGCATTTTGGATTGGAAGAAGAGATTTAATATAATAGATGGAATTGCTCGAGGTCTTCTTTATCTTCACAGAGATTCGAGACTGAAAATCATTCATAGAGATCTCAAAGCAAGTAATATCTTGTTAGACAAAAATTTGAATCCTAAAATTTCAGATTTTGGCACGGCAAGAATTTTTGGTGGCGATGAAGTTGAAGCAAACACTATAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAATACGCATTGGAAGGTCAATTTTCAGAAAAATCAGATGTGTTTAGTTTTGGAGTTTTGCTACTTGAAATTATTTGTGGGAGAAGAAATACAAAGTTCCACGAGCATGAACATGGGACAAGCTTGGTTGGATATGCATGGAAGTTGTGGGTGGAAAACAATCTGATTCCTTTGATTGAACCAACCATACATGAATTGTGCTTCCAACCAGAGATTTTGCGCTGCATTCATGTGGGGCTCTTATGCATTCAAGAATTTGTAGATGATAGACCACATGTGTCTACCATTATTTCAATGCTCAACAGTGAAATTATAGATCTTCCCTCTCCAAAACGACCTGGATTTGTTGGCAAATCACACAAAAGTGACATGGAGTCATCTGAACAAAATCTAGATAAATATTCTACCAATAGTGTTACATATTCTGTAAATAGTGGTACACCTACTGCAATTACACCTCGATAG 2541 39.08 MRLQTDWRFSLRFLLLLLSFCYGRSDTITSTNFIKDPATIASNGSTFKLGFFSPLNSTRRYVGIWLNNISVQTIVWVANRDSPLNDTSGIFTISKDGNLVVLDGNDTVLWSSNVSSPLVNTSAQILDTGNLILQDAVSGFVIWESFQHPSNVFLYSMKLITNKDMNSKDKVQLTSWKNPSDPSTGNFLFGLDVQYLPELVIWNGRNPYWRSGPWNGNTFIGRPEMTDIYLSGYNLVIGDNTYTLSTPYRSVDMQEYEFLSLSSQGNWEQKYWDAKEAQLKNYWSALGTQCDFYGACGTAGICDVKASPVCSCIKGFKPKHEEEWNKGNWSRGCVRKTPLNCTHNSNNATAEAADGFFKLETIKLPFLEQWSNASYYEDECRQECFTNCSCTAYAFEKGIGCMLWRRDDLIDIQKFESGGADLYLRMAYADLDHTTNQVKDKKRIIIAIVLPGTFIIFITIAIYFWWRLKTHKHEKKTSIKSSKKGKILKCTRDDDTIGDEIELEELPLYDFEELAIATNNFDLSNQLGQGGFGPVYKGKLLNGQEIAIKRLSRTSNQGYEEFITEVKVISKLQHRNLVQLLGCCIEGEEKMLIYEYMANGSLDAMIFDSSKQSILDWKKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKNLNPKISDFGTARIFGGDEVEANTIRVVGTYGYMSPEYALEGQFSEKSDVFSFGVLLLEIICGRRNTKFHEHEHGTSLVGYAWKLWVENNLIPLIEPTIHELCFQPEILRCIHVGLLCIQEFVDDRPHVSTIISMLNSEIIDLPSPKRPGFVGKSHKSDMESSEQNLDKYSTNSVTYSVNSGTPTAITPR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15018230 15021831 - MC03g_new0341 Mch3g1179 684082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1179 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 806 - -
Mch3g1179 846 PIRSF SRK 3 845 IPR024171 GO:0004674(InterPro)
Mch3g1179 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 215 IPR036426 -
Mch3g1179 846 CDD B_lectin 31 149 IPR001480 -
Mch3g1179 846 CDD PAN_AP_plant 337 427 - -
Mch3g1179 846 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Mch3g1179 846 Gene3D Phosphorylase Kinase; domain 1 498 596 - -
Mch3g1179 846 Pfam D-mannose binding lectin 73 177 IPR001480 -
Mch3g1179 846 ProSiteProfiles Protein kinase domain profile. 521 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1179 846 Gene3D - 19 148 IPR036426 -
Mch3g1179 846 Pfam Protein tyrosine and serine/threonine kinase 523 722 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1179 846 SMART ntp_6 351 426 IPR003609 -
Mch3g1179 846 SMART blect_4 31 149 IPR001480 -
Mch3g1179 846 Gene3D Transferase(Phosphotransferase) domain 1 597 798 - -
Mch3g1179 846 CDD STKc_IRAK 527 793 - -
Mch3g1179 846 SUPERFAMILY Protein kinase-like (PK-like) 506 818 IPR011009 -
Mch3g1179 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Mch3g1179 846 SMART serkin_6 521 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1179 846 ProSiteProfiles PAN/Apple domain profile. 341 427 IPR003609 -
Mch3g1179 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
Mch3g1179 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1179 846 FunFam receptor-like serine/threonine-protein kinase SD1-8 494 596 - -
Mch3g1179 846 MobiDBLite consensus disorder prediction 803 846 - -
Mch3g1179 846 Pfam Domain of unknown function (DUF3403) 794 835 IPR021820 GO:0004674(InterPro)
Mch3g1179 846 MobiDBLite consensus disorder prediction 821 846 - -
Mch3g1179 846 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544(InterPro)
Mch3g1179 846 Pfam PAN-like domain 351 411 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1179 Mch-Chr3:15018230 Mch3g1186 Mch-Chr3:15073426 0 dispersed
Mch3g1183 Mch-Chr3:15061380 Mch3g1179 Mch-Chr3:15018230 2.15E-63 dispersed
Mch3g1179 Mch-Chr3:15018230 Mch3g1180 Mch-Chr3:15040977 0 tandem
Mch1g1806 Mch-Chr1:18260398 Mch3g1179 Mch-Chr3:15018230 1.40E-204 wgd
Mch10g1139 Mch-Chr10:8548939 Mch3g1179 Mch-Chr3:15018230 2.27E-221 wgd
Mch11g1127 Mch-Chr11:7892222 Mch3g1179 Mch-Chr3:15018230 7.34E-217 wgd
Mch2g0602 Mch-Chr2:4134040 Mch3g1179 Mch-Chr3:15018230 1.13E-106 wgd
Mch3g1179 Mch-Chr3:15018230 Mch4g0198 Mch-Chr4:1323098 3.56E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77264 PF07714 PK_Tyr_Ser-Thr 2.70E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1179 - - - 0.0