Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1180 ATGAAATCCAAAAAAAGCTGCAATTTTTCCTGTCCTCTTCTTCATCTTCTTCTTCTTCTTTCATTTACATGCTTCTCTTCAACATTTTGCTCTGCCAAAGATACCATCACATCAACAAATTTCATCAAAGACCCTGCAACTATATCATCCAATTCCAGTTCCTTCGAGTTGGGATTCTTCGCACCTCCTAATTCTACCCGCCGATATGTCGGAATTTGGTTCAACCAAGTCTCCGTACAAACCTTAATATGGGTAGCCAACAGAGACAATCCTTTAAACAACACTTCTCAAGGGATCTTCACAATTTCCAAGGATGGGAATCTTGTGGTCTTAGATGGAAACGACACCGTCCTCTGGTCTTCAGATGTTTCTTCTTCTTCTTCAACCAATCGAAGCGCCCGAATTTTAGATTCGGGAAACCTGGTTCTGGAAGATGCTTCTTCAGGGGAGGTTATATGGCAGAGTTTCAAACACCCTTCTGACAAATTCTTGCCCGCCATGCAAATCATCACAAACAAATTAGACGTAAATTCCAAAGACAAGGTTCAGCTTACCTCATGGAAAAACCCTTCGGATCCATCTACAGGAAACTTTTCCTTCGGGATGGATGTTCAAAATCTCCCAGAAGTTGTGGTTTGGAATGGCCGTGATCCTTATTGGCGGTCTGGTCCATGGAATGGTAATTCTTTTATCGGAGTACCCGAAATGGAAGCTGTTTATCTTTCCGGATACAGCCTTGTAATCCAAGACCAAACTTACACTCTCTCTGTTTCTTACAATTATAGCATTCAAGAATTTGCTTATTTGTTTTTAAGCCCGGGAGGGAATTTGCAGCAAACGTACTGGGATGTTTCGGAGGAGCGCTGGAAGATTACTTGGATGTCTCTACAAACGCGTTGCGATTTGTATGGTGCTTGTGGGGCATTTGGGATCTGCAATCCCAAACCGTCCCCTGTTTGCAGCTGTTTAAAAGGGTTTAAGCCAAATCATGAAGAGGAGTGGAATCAAGGAAATTGGAGTGGTGGTTGTGTCAGAAATACACCATTGCTGTGTAATGCCACCACTCTGGAAGATGGGTTTTTGAAAGTGGAAACAGTTAAATTGCCATTTTTGGCAGAGTGGTCCGGCATTTCCTCTCTTACAGCAGATGATTGCAGACAGTTGTGCTTGAAGAATTGTTCTTGTACTGCTTATGCATATGAAAATGGTATCAATTGTATGCTTTGGAGAAGGGATGATTTAATTGATATGCAAAAGTTTGAGAGTGGTGGAGCTGATCTTTATGTTCGAATGGCGTATGCCGACTTAGATCATACTACAAATGATCGTGTAAAAGACAAGACGGGAATTATTATAGCCATAGTGCTACCGACAACGCTTGTCATTTTCGTCATTGCAATATACTTGTGGTTGAGATGGAAAAGGAAAGCTCCCAAAAACGAGAAGAAGAAAACTATGGCGTCCGGAGAAAAAGAGAAGATTTTGAAACTGAAAAGAGAAGATGATATGATTGAGGATGATATAAAACTTGAGGAGCTACCTATTTATGATCTTGAGAAGCTGGCAATGGCAACCAACAATTTTGATTTGACCAACAAGCTTGGGCAAGGTGGCTTTGGTCCAGTGTATAAGGGAAAATTAGCAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGGGTCTCCCAACAAGGATATGAAGAATTTATTAATGAAGTAAGAGTAATTTCAAAACTACAACATAGGAATCTTGTGCGACTTTTTGGTTGTTGCATCGAAGGAGAAGAGAAGATGTTGATATATGAGTATATGCCCAACCTAAGTTTGGATGCATTAATTTTTGGCTCCTCCAAACAAAAACTTTTGGATTGGAGAGAGAGATTTAATATTATCGATGGAATTGCTCGAGGACTTCTTTATCTTCATAGGGATTCGAGATTGAAAATTATTCATAGAGATCTCAAGGCGAGCAATATTCTGTTAGACAAAAATTTCAACCCTAAAATTTCGGACTTTGGCACGGCAAGAATTTTTTATGGCAATGAAGTTAAAGCCAACACTTTAAGAATTGTTGGAACTTATGGATATATGTCTCCTGAATATGCAATGCAAGGTCAATTTTCAGAGAAATCAGACGTGTTTAGTTTTGGAGTTCTATTGCTTGAAATTATTAGTGGAAGACGAAATACAGGGTTCTACTACCACGAGCATTCTTTGAACTTATTAGAATTTGTATGGAAGTTATGGGAGGGAGACGATCTAATTCATCTGATTGAACCTACAATTTATGAATTGAGGTACCAAGGAGAGATTTTGAGATGCATTCATGTTGGGCTCTTGTGCATTCAAGAACTTATAAATGATAGGCCAAATGTTTCTACCATTATCTCAATGCTGAATAGTGAAATTGTAGATCTTCCTTTCCCAAAACAACCGGGCTTTATTGGTAGACCACGCGAGAATAGCATAGAGGAATCTCAAAAAAATTGTGATAAATTTTCTGTAAATAATAGTCTTACAGTTACCACAATTGTACCTCGGTAG 2544 39.31 MKSKKSCNFSCPLLHLLLLLSFTCFSSTFCSAKDTITSTNFIKDPATISSNSSSFELGFFAPPNSTRRYVGIWFNQVSVQTLIWVANRDNPLNNTSQGIFTISKDGNLVVLDGNDTVLWSSDVSSSSSTNRSARILDSGNLVLEDASSGEVIWQSFKHPSDKFLPAMQIITNKLDVNSKDKVQLTSWKNPSDPSTGNFSFGMDVQNLPEVVVWNGRDPYWRSGPWNGNSFIGVPEMEAVYLSGYSLVIQDQTYTLSVSYNYSIQEFAYLFLSPGGNLQQTYWDVSEERWKITWMSLQTRCDLYGACGAFGICNPKPSPVCSCLKGFKPNHEEEWNQGNWSGGCVRNTPLLCNATTLEDGFLKVETVKLPFLAEWSGISSLTADDCRQLCLKNCSCTAYAYENGINCMLWRRDDLIDMQKFESGGADLYVRMAYADLDHTTNDRVKDKTGIIIAIVLPTTLVIFVIAIYLWLRWKRKAPKNEKKKTMASGEKEKILKLKREDDMIEDDIKLEELPIYDLEKLAMATNNFDLTNKLGQGGFGPVYKGKLANGQEIAVKRLSRVSQQGYEEFINEVRVISKLQHRNLVRLFGCCIEGEEKMLIYEYMPNLSLDALIFGSSKQKLLDWRERFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKNFNPKISDFGTARIFYGNEVKANTLRIVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYYHEHSLNLLEFVWKLWEGDDLIHLIEPTIYELRYQGEILRCIHVGLLCIQELINDRPNVSTIISMLNSEIVDLPFPKQPGFIGRPRENSIEESQKNCDKFSVNNSLTVTTIVPR 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15040977 15044657 - MC03g_new0342 Mch3g1180 684083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1180 847 CDD STKc_IRAK 534 800 - -
Mch3g1180 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1180 847 FunFam receptor-like serine/threonine-protein kinase SD1-8 500 603 - -
Mch3g1180 847 Pfam Protein tyrosine and serine/threonine kinase 530 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1180 847 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
Mch3g1180 847 ProSiteProfiles Bulb-type lectin domain profile. 33 156 IPR001480 -
Mch3g1180 847 Pfam S-locus glycoprotein domain 220 329 IPR000858 GO:0048544(InterPro)
Mch3g1180 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 156 - -
Mch3g1180 847 CDD B_lectin 39 159 IPR001480 -
Mch3g1180 847 Gene3D - 27 157 IPR036426 -
Mch3g1180 847 SMART blect_4 39 159 IPR001480 -
Mch3g1180 847 Gene3D Phosphorylase Kinase; domain 1 503 603 - -
Mch3g1180 847 SMART serkin_6 528 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1180 847 CDD PAN_AP_plant 347 432 - -
Mch3g1180 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Mch3g1180 847 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 813 - -
Mch3g1180 847 SMART ntp_6 355 431 IPR003609 -
Mch3g1180 847 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 226 IPR036426 -
Mch3g1180 847 ProSiteProfiles PAN/Apple domain profile. 351 432 IPR003609 -
Mch3g1180 847 Pfam D-mannose binding lectin 81 188 IPR001480 -
Mch3g1180 847 ProSiteProfiles Protein kinase domain profile. 528 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1180 847 Pfam PAN-like domain 354 417 IPR003609 -
Mch3g1180 847 SUPERFAMILY Protein kinase-like (PK-like) 514 820 IPR011009 -
Mch3g1180 847 SUPERFAMILY Hairpin loop containing domain-like 357 428 - -
Mch3g1180 847 PIRSF SRK 5 847 IPR024171 GO:0004674(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1180 Mch-Chr3:15040977 Mch3g1186 Mch-Chr3:15073426 0 dispersed
Mch8g1124 Mch-Chr8:8038458 Mch3g1180 Mch-Chr3:15040977 1.08E-70 dispersed
Mch3g1179 Mch-Chr3:15018230 Mch3g1180 Mch-Chr3:15040977 0 tandem
Mch3g1180 Mch-Chr3:15040977 Mch3g1181 Mch-Chr3:15048515 3.64E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77265 PF07714 PK_Tyr_Ser-Thr 1.10E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1180 - - - 0.0