Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1186 ATGAAACCCGTACAGAATTATTGGAGTTTTTCAGGTCGTCTTCTTCTTCTGTCGTTTACATGCTTCTATTCAAGCTTTTGCTTCGGCAGAGATACTATCACATCAACAAATTTCATCAAAGACCCTGCAACTATAATATCCAATTCCAGTTCCTTCGAGTTGGGGTTCTTCACACCTGTTAATTCTACGAGCCGATATGTCGGAATTTGGTTTAAGCAACAAATTTCTGTACAAATGGTTGTATGGGTAGCCAACAGAGATAACCCTCTCCACGATGCTGCCGGGATTTTCACAATTTCGAAGGATGGTAATCTTGTTGTCTTAGATGGAAACAACGCCGTCGTTTGGTCTTCCAATATTTCTTCTTCTTCTTCTTCTGGAACCAACACAAGCGCCCGAATTTCAGATACCGGTAACCTTGTTTTGGAAGATACGGCTTCCGGGTTGGTTTTATGGGAGAGTTTCAAACACCCTACTCATGCATACTTGCCTTCCATGGAATTTATCACAAACACAAAAACCGACGAGGAAATTGGGCTTACTTCATGGAACACCCCTTCTGATCCATCCATGGGAAACTTTTCGTTGACACTGTTTATTCACAATATTCCTGAAAATGTCATTTGGAACGGGCGTACCCCGTATTGGAGGTCTGGTCCGTGGAATGGGCAGACTTTTATAGGGATGCCCGAAATGAAATCTGTTTATCTCTCTGGAAATAGTCTCTTAATCGAAGACCAAACTTACCATCTCACCAATGGTCAAAAATCCATGTACATATTTTTAAGCTCACAAGGGAATGTGGAGCGAAGGGCGTGGGATTCTACGGAGGAGCGCTGGAAAGTTATTTGGTCAGCTCCACGAACGCAGTGTGATTTTTATGGTGCTTGTGGGGCATTTGGGTTCTGTAATGCAAAAGCATCCCCTGTTTGTAGATGTTTAAGAGGGTTTAAGCCAAAGCAGGAAGAGGAATGGAATCAAGGAAATTGGAGTGGTGGATGCGTGAGAATTACACCAGTGAAGTGTGGGAAATTCAACACAGCCAACGCTGAGGAAGATGGGTTTTCAAAAGTGGAAATGGTTAAAGTGCCATTTCTTGCAGAGTGGTCCAATTCCTCTGCTACAGCAGATGACTGCAAACATGAGTGCTTGAAGAATTGTTCGTGTAGTGCTTATGCATATGAAAATGGCATTCATTGCATGCTATGGAAAAGCGATTTAATTGATATACAGAAGTTTGAGAGTGGTGGAGCTGATGTTTACCTTCGTTTGGCATATGCAGACTTAGACCACACCATTCCATCCACAGAGGATGTAAAACACAAGAAAGGAATCATAATAGCCCTGGTGGTAGCAGGAATGTTTATCATCTCCATCATTGTCATATACTTCAGCTGGAGATGGAAGACTCACAAACATGCAAAGAAAACCAGAGGCAAGAAGATGTCATTGTTCAACGAATTGAGGGGAAATTTCTTGAACTCGACGATGGGTCATAGAATTGGAGACAACTTGAACCAAGAGTTACCAACTTATGACCTTGAGAAGCTGGAAATTGCAACAAACCATTTTCATATGGGAAACAAGCTTGGAGAGGGTGGGTTTGGCCCTGTGTATAAGGGGAGATTGGTGGATGGACAAGAAATAGCTGTAAAAAGACTTTCAACAGCCTCTGCCCAAGGGCTTGAAGAATTCATAAACGAAGTAACAGTAATTTCGAAACTCCAACATCGGAATCTTGTTCGGCTTTTTGGTTGCTGTGTTGAAGCTGAAGAAAAGATGTTGATATATGAGTACATGCCAAACTTAAGTTTGGACGCATTTATCTTTGATTCCTCCAAACAAAAACTCTTAGATTGGGGAAAAAGGCTCAACATCATTAGGGGGATTGCACGAGGCCTCCTTTACCTTCACAAAGATTCTAGATTGAAGATCATTCATAGAGATCTAAAAGCGAGCAACATTCTATTGGATGAAAACTTTAATCCCAAAATTTCAGATTTTGGTATGGCACGGATTTTTGGCAACAATGAAGATCAAGCAAGCACTTTAAGAGTGGTTGGAACTTATGGCTACATGTCTCCCGAATATGCAATGCAAGGCCGATTCTCAAAGAAATCAGACGTGTTTAGTTTCGGAGTTTTGTTGCTTGAAATTATTAGTGGGAGAAAAAATACAAGCTTTTGCCACGACGAGAATGTCATAAGCCTATTAGGACTGGCTTGGAAATTATGGAATGAAGAGAATCTAATTTCTTTGATTGATCCAGCAATACATGACTCGTGTCATCACACAGAGATTTTGAGATGCATGCACATAGGACTGTTGTGCGTTCAAGAAGCCATAAAGGATAGGCCAAATATGTTGACCATTCTTTCGATGCTTAATAGTGAAATTATAGATCTTTATCCTCCTAAACAACCTGGCTTTACTAGCATAAAATTTGAGAGTAATACAAATTTAGCTCAGCATAGTCAGGGTAAACGTTCTGTAAATATGGTTACAATTACCAAGATTGAGGGACGGTAA 2529 40.85 MKPVQNYWSFSGRLLLLSFTCFYSSFCFGRDTITSTNFIKDPATIISNSSSFELGFFTPVNSTSRYVGIWFKQQISVQMVVWVANRDNPLHDAAGIFTISKDGNLVVLDGNNAVVWSSNISSSSSSGTNTSARISDTGNLVLEDTASGLVLWESFKHPTHAYLPSMEFITNTKTDEEIGLTSWNTPSDPSMGNFSLTLFIHNIPENVIWNGRTPYWRSGPWNGQTFIGMPEMKSVYLSGNSLLIEDQTYHLTNGQKSMYIFLSSQGNVERRAWDSTEERWKVIWSAPRTQCDFYGACGAFGFCNAKASPVCRCLRGFKPKQEEEWNQGNWSGGCVRITPVKCGKFNTANAEEDGFSKVEMVKVPFLAEWSNSSATADDCKHECLKNCSCSAYAYENGIHCMLWKSDLIDIQKFESGGADVYLRLAYADLDHTIPSTEDVKHKKGIIIALVVAGMFIISIIVIYFSWRWKTHKHAKKTRGKKMSLFNELRGNFLNSTMGHRIGDNLNQELPTYDLEKLEIATNHFHMGNKLGEGGFGPVYKGRLVDGQEIAVKRLSTASAQGLEEFINEVTVISKLQHRNLVRLFGCCVEAEEKMLIYEYMPNLSLDAFIFDSSKQKLLDWGKRLNIIRGIARGLLYLHKDSRLKIIHRDLKASNILLDENFNPKISDFGMARIFGNNEDQASTLRVVGTYGYMSPEYAMQGRFSKKSDVFSFGVLLLEIISGRKNTSFCHDENVISLLGLAWKLWNEENLISLIDPAIHDSCHHTEILRCMHIGLLCVQEAIKDRPNMLTILSMLNSEIIDLYPPKQPGFTSIKFESNTNLAQHSQGKRSVNMVTITKIEGR 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15073426 15077551 - MC03g_new0348 Mch3g1186 684089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1186 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 599 - -
Mch3g1186 842 SMART ntp_6 350 424 IPR003609 -
Mch3g1186 842 Pfam S-locus glycoprotein domain 216 320 IPR000858 GO:0048544(InterPro)
Mch3g1186 842 Pfam D-mannose binding lectin 80 183 IPR001480 -
Mch3g1186 842 SMART serkin_6 524 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1186 842 Pfam Protein tyrosine and serine/threonine kinase 525 792 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1186 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 155 - -
Mch3g1186 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1186 842 Gene3D Transferase(Phosphotransferase) domain 1 600 801 - -
Mch3g1186 842 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Mch3g1186 842 CDD B_lectin 36 158 IPR001480 -
Mch3g1186 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 810 - -
Mch3g1186 842 SMART blect_4 36 158 IPR001480 -
Mch3g1186 842 Gene3D Phosphorylase Kinase; domain 1 499 599 - -
Mch3g1186 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Mch3g1186 842 CDD PAN_AP_plant 338 425 - -
Mch3g1186 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 222 IPR036426 -
Mch3g1186 842 ProSiteProfiles Protein kinase domain profile. 524 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1186 842 PIRSF SRK 3 842 IPR024171 GO:0004674(InterPro)
Mch3g1186 842 Pfam PAN-like domain 350 410 IPR003609 -
Mch3g1186 842 SUPERFAMILY Protein kinase-like (PK-like) 504 795 IPR011009 -
Mch3g1186 842 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Mch3g1186 842 Gene3D - 27 156 IPR036426 -
Mch3g1186 842 CDD STKc_IRAK 530 796 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1179 Mch-Chr3:15018230 Mch3g1186 Mch-Chr3:15073426 0 dispersed
Mch3g1180 Mch-Chr3:15040977 Mch3g1186 Mch-Chr3:15073426 0 dispersed
Mch3g1181 Mch-Chr3:15048515 Mch3g1186 Mch-Chr3:15073426 4.56E-42 dispersed
Mch3g1184 Mch-Chr3:15062513 Mch3g1186 Mch-Chr3:15073426 3.45E-109 dispersed
Mch3g1186 Mch-Chr3:15073426 Mch3g1188 Mch-Chr3:15110914 2.40E-220 dispersed
Mch3g1183 Mch-Chr3:15061380 Mch3g1186 Mch-Chr3:15073426 1.46E-50 proximal
Mch3g1185 Mch-Chr3:15069370 Mch3g1186 Mch-Chr3:15073426 3.09E-159 tandem
Mch3g1186 Mch-Chr3:15073426 Mch3g1187 Mch-Chr3:15081308 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77267 PF07714 PK_Tyr_Ser-Thr 7.30E-50 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1186 - - - 0.0