Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1188 ATGGATCCTCCTCCTGAACGGGCCGTCTTCAAAATTTTAATGTTTTTGGTTATTTTTGTTCGCCCTCACTACTTTATCCTTGCCGTCGGTAATACAACTGTCATTGACATCATCAAAGATGGAGGTCATTTGGTCTCCAGCAACAAAAATTTCGTTCTTGGATTCTTCAGCTTCCACAATTCCACCACTCGCCGATATGTCGGAATTTGGTACAACAAAATTCCCGAACTAACCCCCGTCTGGATTGCCAACAGAGACCAACCGCTGAACGACACCTCAGGAACCCTCGCCCTCGACGGTCATGGAAATGTCGTCGTATACAGCCCCGCACAAAGAATATCTATTTGGTCCACAAACGCTTCGATCCCGGCATCGAACGACGTGTCGGTCGAGCTTTGGGATACCGGGAATCTCGCCGTGGTCCAACGAGAAAGCCGACGGGTTATATGGCAAAGCTTTGACTATCCGACCCACACCATGCTTCCGTACATGAAATTGGGGCTGAACCGGAGAACCGGGTTCAGCTGGTCACTGACGTCATGGAAGGCGGAGGACGATCCGGGAACCGGGAATTTCAGCTGTAGAATGGACACGACCGGGTACCCGCAGTTGGTTTTGTACGAGGGTGATGTTCCGTGGTGGCGGGTCGGGTCGTGGACGGGTCGCAGGTGGAGCGGTGTGCCCGAGATGACGAGGTCTTTCATAATCAACACATCGTACATCGACAACAGCGAGGAGGTTTCAATATCCAACGGCGTGACGGACGACACGGTGCTGACGAGGATGATTCTAGACGAATTGGGGTTGCTGCGTCGATCCAGGTGGCAGGAAAAAGACCATGTGTGGAGCGAATTCTGGTCGGCGCCAACGGAGTGGTGCGACACCGAGTACAACCGGTGCGGTCAGAACAGTAACTGCAACCCTTACACGGACCAATATCAATGCCAGTGCCTGCCCGGGTTCGAACCCAGGTCGGAGCGTGATTGGTTCTTGAGAGATCCGTCGGGCGGGTGCGTGAGGAAGCGGTCAAACGCCACGTGTCGGAGTGGGGAGGGATTCGTGAAGGTAGAGCGCGTGAAGGTACCAGACACGTCGACGGCACTTGGGAACAAGAGCATGAGTTTGGAAGCGTGCGAGCAAGCGTGTCTGAAGGATTGTAATTGTACGGCTTACACGAGCGCAGATGAGACGACGGGGATCGGGTGCGTGACGTGGTATGGGGATTTGATAGACACGCGAACCTTTACCAACGCGGGACAAGATCTCTACGTGAGAGTTGATGCAGTTGAATTAGCTCAATATGCAAAAAAAAATTCAAATCATCGTTCGACAAAGAAGGTGGTGGCAATTGTCGTTGTGTCGATCGTTGGAGCATTGTTGCTTGTGAGCTCACTAGTTTATTTATGGGAAATTAGAAGAAAAGCTGGAAGGGAGAGATCTAATAGTTTATCTTACTTGGGGGATTCTCCAAATCCGAATAAAGAGTTTGATGAAAGTAGAAGGAGCTCAGATCTGCCTGTATTTGACTTGAATGCCATAGCAAAGGCAACAGACAATTTTTCTTTTAATAACAAGCTTGGACAAGGTGGATTTGGGGCAGTTTATAAGGGGAAGCTTGCAAATGGAGAAGAAATTGCAGTTAAAAGGTTGGCTAAGAATTCAGGCCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTCCAACACAGAAACCTCGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAGATGCTCGTATATGAATATTTGCCAAACAAAAGCTTGGACTTTTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTAGATTGGAGAAAACGTTTTGAAATCATTTGTGGGATTGCACGAGGGATATTATATCTCCATCAAGATTCAAGATTGAAAATCATCCATCGAGATTTGAAGGCGAGCAATATCCTATTAGATGTTAACTTAAATCCCAAAATCGCAGATTTTGGTATGGCAAGAATATTCGGCCAAGATCAAATTCAAGCAAATACAAATCGTATTGTGGGAACATACGGTTACATGTCGCCGGAATATGCGATGGAAGGACTATTTTCAGAGAAATCCGATGTATATAGCTTTGGGGTGTTGGTGCTAGAGATGATTACAGGCCGAAAGAACACCAATCATATGTCCTCCTACTTAAACTTGGTCGGACATGTTTGGGAGCTGTGGAAAGTGGAGAAAGCAACGGAATTAGTGGACTCAAGTTTGGAATTAGAATCAGGTAGTGGAGAAGAAATGATGAGATGCGTCCAAATTGGGCTGTTGTGTGTGCAGGAAGATCCGACAGATCGTCCAAGCATGTCGACTGTCGTCTTCATGCTAGGAAATGAAGTGGTTCTTCCATCTCCAAAGAAACCTGCGTTTATTATGAAGAGAAAATACAACAGTGGAGATCCATCCACCAGTACCGAAGGAGGCAACTCTGTAAATGACGTTACAATTTCCATAATGCATGCTCGTTGA 2511 46.99 MDPPPERAVFKILMFLVIFVRPHYFILAVGNTTVIDIIKDGGHLVSSNKNFVLGFFSFHNSTTRRYVGIWYNKIPELTPVWIANRDQPLNDTSGTLALDGHGNVVVYSPAQRISIWSTNASIPASNDVSVELWDTGNLAVVQRESRRVIWQSFDYPTHTMLPYMKLGLNRRTGFSWSLTSWKAEDDPGTGNFSCRMDTTGYPQLVLYEGDVPWWRVGSWTGRRWSGVPEMTRSFIINTSYIDNSEEVSISNGVTDDTVLTRMILDELGLLRRSRWQEKDHVWSEFWSAPTEWCDTEYNRCGQNSNCNPYTDQYQCQCLPGFEPRSERDWFLRDPSGGCVRKRSNATCRSGEGFVKVERVKVPDTSTALGNKSMSLEACEQACLKDCNCTAYTSADETTGIGCVTWYGDLIDTRTFTNAGQDLYVRVDAVELAQYAKKNSNHRSTKKVVAIVVVSIVGALLLVSSLVYLWEIRRKAGRERSNSLSYLGDSPNPNKEFDESRRSSDLPVFDLNAIAKATDNFSFNNKLGQGGFGAVYKGKLANGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDFFIFDESKRALLDWRKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDVNLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSEKSDVYSFGVLVLEMITGRKNTNHMSSYLNLVGHVWELWKVEKATELVDSSLELESGSGEEMMRCVQIGLLCVQEDPTDRPSMSTVVFMLGNEVVLPSPKKPAFIMKRKYNSGDPSTSTEGGNSVNDVTISIMHAR 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15110914 15114806 + MC03g_new0349 Mch3g1188 684091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1188 836 CDD EGF_CA 293 325 - -
Mch3g1188 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Mch3g1188 836 SMART blect_4 35 156 IPR001480 -
Mch3g1188 836 Gene3D - 33 153 IPR036426 -
Mch3g1188 836 PIRSF SRK 4 836 IPR024171 GO:0004674(InterPro)
Mch3g1188 836 SMART ntp_6 348 426 IPR003609 -
Mch3g1188 836 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Mch3g1188 836 Pfam Protein tyrosine and serine/threonine kinase 521 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1188 836 Pfam D-mannose binding lectin 78 182 IPR001480 -
Mch3g1188 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1188 836 Pfam PAN-like domain 347 412 IPR003609 -
Mch3g1188 836 MobiDBLite consensus disorder prediction 481 500 - -
Mch3g1188 836 Gene3D Transferase(Phosphotransferase) domain 1 596 796 - -
Mch3g1188 836 SMART serkin_6 520 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1188 836 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1188 836 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544(InterPro)
Mch3g1188 836 Pfam Domain of unknown function (DUF3403) 792 836 IPR021820 GO:0004674(InterPro)
Mch3g1188 836 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 803 - -
Mch3g1188 836 Gene3D Phosphorylase Kinase; domain 1 494 595 - -
Mch3g1188 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 488 595 - -
Mch3g1188 836 Gene3D Laminin 294 341 - -
Mch3g1188 836 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Mch3g1188 836 CDD STKc_IRAK 526 790 - -
Mch3g1188 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 798 - -
Mch3g1188 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 153 - -
Mch3g1188 836 CDD PAN_AP_plant 346 426 - -
Mch3g1188 836 CDD B_lectin 37 156 IPR001480 -
Mch3g1188 836 SUPERFAMILY Protein kinase-like (PK-like) 496 790 IPR011009 -
Mch3g1188 836 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1186 Mch-Chr3:15073426 Mch3g1188 Mch-Chr3:15110914 2.40E-220 dispersed
Mch3g1188 Mch-Chr3:15110914 Mch4g0198 Mch-Chr4:1323098 1.25E-136 dispersed
Mch3g1187 Mch-Chr3:15081308 Mch3g1188 Mch-Chr3:15110914 9.12E-220 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77269 PF07714 PK_Tyr_Ser-Thr 2.10E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1188 - - - 0.0