Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1203 ATGGGCTCGCCTGAAGATACGGATTGGGTTTTCGATTACGGTGTTATAGAGGACATTCCTGTCCCCGGCGGTGACCTCCCCTCGCTTGATCCTCCTGCTTTCACTTTGCCTTCTCGTGATTTTACTCCCTCCTTCAGGACAGACTTTGAGGAGCCACATAGAAAGCCAGATGATATAAATGAAACGGGGTCCAGGAAAAGGATGAGCTCTGGAGGGTCCAAAGCACATAAAGAGAAACTGCGGAGGGATAGGCTAAATGACAGGCAGTTTCTGGAACTGAATTCCATCGTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTACTCTTTTGGGTGATGCAGTTCGGATGATCATACAGTTACGGGACGAGGCTCAGAAGCTGAAGGAGTCTAATGAAACTTTTTTGGTGAAGATTAATGAAATCAAGGCTGAAAAGAATGAACTTCGAGATGAGAAACTGAGGCTGAAAGAAGCAAAAGACAACCTCGAACAAAAAATGAAGGCGTTCAATCCTCAACCAGCTTTCCTGCCTCACCCTCCTGCAATTCCCGCTGCATTTTCTGCCACAAACCAGGCCGTTGGGGGCAAGTTGGTACCTGTGATTGGATATCCTGGAGTATCCATGTGGCAGTTTATGCCTCCGGGTGCCATCGATACCTCGCAAGACCACATTCTCCGGCCACCAGTCGCCTAA 696 48.28 MGSPEDTDWVFDYGVIEDIPVPGGDLPSLDPPAFTLPSRDFTPSFRTDFEEPHRKPDDINETGSRKRMSSGGSKAHKEKLRRDRLNDRQFLELNSIVNHGRPPKIDKSTLLGDAVRMIIQLRDEAQKLKESNETFLVKINEIKAEKNELRDEKLRLKEAKDNLEQKMKAFNPQPAFLPHPPAIPAAFSATNQAVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHILRPPVA 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15229738 15238023 + MC03g0850 Mch3g1203 684106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1203 231 Pfam Helix-loop-helix DNA-binding domain 74 122 IPR011598 GO:0046983(InterPro)
Mch3g1203 231 PANTHER BHLH TRANSCRIPTION FACTOR 8 231 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Mch3g1203 231 SMART finulus 75 127 IPR011598 GO:0046983(InterPro)
Mch3g1203 231 Gene3D - 60 136 IPR036638 GO:0046983(InterPro)
Mch3g1203 231 CDD bHLH_AtILR3_like 74 150 - -
Mch3g1203 231 MobiDBLite consensus disorder prediction 22 84 - -
Mch3g1203 231 Coils Coil 125 169 - -
Mch3g1203 231 MobiDBLite consensus disorder prediction 44 64 - -
Mch3g1203 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 149 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1203 Mch-Chr3:15229738 Mch5g0087 Mch-Chr5:559774 1.83E-26 dispersed
Mch11g1152 Mch-Chr11:8087487 Mch3g1203 Mch-Chr3:15229738 7.87E-62 wgd
Mch2g0619 Mch-Chr2:4246485 Mch3g1203 Mch-Chr3:15229738 2.63E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43046 PF00010 HLH 1.50E-05 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1203 - - - 0.0