Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1208 ATGGCTGCAACAAAGAGCGTGGTCTTGGGCATACTCAATTTTCTTAGTTTCATCTTCCTCCCTAGTTTCATCACCGCTCAGACTCTATTACAATACCCATATCGCAGTTGCTTACCCGGCAATTTCACCCAGAACAGCGCCTATCAGTCCAGCCTCAATCTTCTGTTTTTAGAATTCAACAACGTCGCCCACCAAAAAACGTTCCACAGTACGTCCGTTGGTCTGACATCAACCGACACCGTTTACGGTCTCTTCCAGTGCTGGGAAGACGTCACCGACAACTGTGGAGCTTGCGTGGCCACAGCCATCAACGACACGGCCAACAACTTCTGCCGCTTCAGGAAAGGCGCTGTGAGTTGGTACGACGGCTGCATATTGCGCTATTCCAACCAATCTATCTTTTCCGACCTCTCCACCGTCCCAAATCTCATGCTACTCAACACCGCAGATATAGACGCCGACAAGCCTCGCTTCAACCAACTGGTCATGTCCACGTTTGGGGGCACCGTGGCCCGGGCGGCTGACGCCTCTTCCGTGGCCGAAATGGTTGCAACTCGAGAGGCAAATTTCACATTTCATACACTTTACACATTGGCACAGTGCACCGGCGATTTATCCATTTCCAATTGCCGAGAATGCTTACGACAGGCCATCGTTGCTGTCCCGAGTTGTTGCGCAAATAAACGAGGCGGCAGAGTTTTGTATCCCAGCTGCTACGTTCGTTACGAAATTTACCCCTTTTACCGACTCACCGCCAACAATCCTCCACCAATTCCCCCGTCCACTCCCAAAACTCCACCACTGCCTCCTCCTCCTCATGCTCCCTCAGGGGAAACCAGATCCTCCACTCTCATAATTCTGGTCACTGTGCTTCCAATTACCGTCTCCATTCTGCTTTTCGTCGGCTGGTGTTTCCTACGCCAGAGAGCAAAGAAGAGATACACTACTGTAAAGGAAGATCACAGTGTTGTTAGTGGGATTAGCACTGTGGAGTCTCTGCAATTTGATTTCAATACAATCGATGCCGCTACTAACAAATTCTCAGCAGAGAACAGGATAGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGAAGGCTTGAAAATGGGCAAGAGATAGCAGTGAAAAGACTATCGAGAGGATCTTTGCAAGGCTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTAGTGAGGCTTTTGGGATTCTGCTTGGAGGGTGAAGAAAAGATTCTCATCTATGAATATATTCCCAACAAAAGCCTTGATTACTTCCTATTTGTGCAGACCCCAAAGAGACAAAAAGAGTTGGATTGGTTGACCCGATATAAGATTATTAATGGGATTGTTCGGGGAATTTTATATCTTCATGAAGATTCCCGACTTCGAATTATCCATCGTGGTCTTAAAGCTAGTAATGTTTTATTGGATGAAAATATGAATCCGAAAGTTTCAGACTTCGGTATGGCACGAATTATTCAAGTGGATCAGAATGAAGCAAATACAAATCGAATTGCCTACGGTTACATGTCTCCTGAATATGCAATGCACGGAAACTTCTTTACAAAATCTGATGTGTATAGCTTTGGAGTCTTAGTGCTGGAGATTATAAGCAGCAAGAAAAACAATACATTTTATCTATCGGGTCTTTCGAAAGACATCTTGACCTATACATGGAAACTATGGAAGGACGAAATACCACTAGAACTATTAGACCCGAGTTTGGGAGACAACTACTTAAGAAATGAGGTACTTAGATGCATTCATATAGCTTTACTATGCGTGCAAGAGGATCCTAGCTGTAGACCTTCCATGGCATCCATTGTTCTTATGTTGAATAGTTATTCGTTTCCTTTACCTCTTCCTAATGAGCCAGCATCCTTCATACGAAATACAGACAATAACAGTAATCAATCTGCAAGTAGGTCAGTCCAATGGTCTGCCAATAAAATATCCATAATTGAGTTGGATCCTGTTGCCATTTTCGTGCTTGTCCTCAGTTTGGGCATCCGTGGACACGCTCAGGGTGATCCTCACCGTTGCTTCGGCGCCAATTTCACCCAAAATAGCACCTACGAGTCCAACCTTAATGTTCTCCTTTCAAATCTCTCCACCAACGCCCCCGGAAGAAACGGATTCTTCAACTCCTCCGCCGGCCGAACGCCAGACGCCGTCTACGGTCTGTTTCAGTGTGGTGGCGACGCCACCAACGCCACCTGCCGGAACTGCGTAATAGAAGCTTCCAGAAACATAGCCCATCAGTACTGTCCCCTGAGTAAAGGCGTTGTGGTTTGGCTTGACGACTGCGTGTTGCGTTATTCCGACCAAATTTTCTTTTCCTTGGTGTCCCGAGAGCCAAGTTTCCAGTTGGATAATCCAGCTGATATAGGCGTCGACACCACTCGCTTCAACCAACTAGTGGCCTCCACGTTGGCCGCCACCGTGGCTCGGGCCGCTGCCTCGCCCGGAGTAATGTTTGCAACAAACCAAGCAACTTTCACCTCAAATACAACACTCTACACATTGGCACAGTGCACCGGTGATTTGTCAAATTCCAATTGTCAAGAATGCTTAACACGAGCCGCCAGGGAAATTCCCCGTTGTTGCTTTAATAAAGAAGGTGGCAGAGTTTTGTTTCCAAGCTGTTATGTTCTGGAATACCAATATCACAGATGCGTGGGCGCAGATTTCGTCCGGAACAGCGCCTATCATTCCAGCCTGAACGTCCTCTTCTCAGATTTCTCCGACATCGCCCCCCACAAAATATTCTACAGCACTTCCGTGGGGCGAACGCCAAACGACACCGTTTACGGCCTCTTCCAGTGCTGGGAAGACGTGGGCAACGACAACTGCGGCGCCTGCGTGGCCACAGCCACCAGAGACACAGCCAATCGCTACTGCTCCTTCAAGAAACGCGCCGAGATTTGGTACGACGGCTGCATATTACGCTATTCCGACCAATATTTCTTCTCCGTCCTGCCCACTGAGCCCAGTCAGATATTGCTCAACATGTTAGACATAGGCGCCCACAGGGCTCGCTTCAACGGCCTTGTGATGGACACGTTGAGGGCAACCACGGCTCGGGCCGCCAACGCCTCCTCTGTGGATGATATGTGCGCAACTCAAAAGGCCAATTTCACGTCAAATCAAACGCTTTACACGTTGGCACAGTGCACCGGCGATTTGTCCATTTCCAATTGCCGAGAGTGCTTAGGGCGGGCCATCAGTAATATTCCCGTTTGTTGCACTGATAAACAAGGTGGCAGAATCTTGTTCCCCAGCTGTTACGTTCGTTACGAAATTTACCCGTTTTACAAACTCACCAGGAAAAAACCTCCTCCAATTCCCCCGCTCGCTTCCAAGACTCCACCACTACCTTCTCCTCTTGTTAAGGAGATCACCACTATGGAATCTCTGCAATTTGACTTCAATACAATCGATGCTGCTACTCACAAATTCTCAGCGGAGAACAGGTTGGGGGAAGGTGGATTTGGTGCAGTCTACAAGGGAAGGCTTGATAATGGACAGGACATAGCAGTGAAAAGATTATCAAGAAGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTCATATTGCTTGCAAAGCTTCAACATAGGAATCTAGTGAGGCTGTTGGGATTCTGCTTGGAGGGTGTTGAAAAGATACTTATCTATGAATATATTCCCAACAAAAGCCTCGACTATTTCCTATTTGACCCTGAGAGACAAAAAGAGTTGGATTGGTCGAATCGATATAAGATTATTAATGGGATTGCTCGAGGAATTTTATATCTACATGAAGATTCTCGACTTCGAATTATTCATCGCGATCTTAAAGCTAGCAACGTTTTGTTGGATGGAGATATGAATCCGAAAATTTCAGACTTTGGTTTGGCGAGAATTATTCAAGTGGATCAAAATCAAGGAAATACAATGCGAATTGCTGGTACCTATGGTTACATGTCTCCTGAATACGCAATGCACGGAAACTTCTCCACAAAATCTGATGTCTATAGCTTTGGAGTTTTAGTGTTGGAGATTATAAGCAGCAAGAAAAACAACACCTTTTATCTGTCGAGTCTTGCCGAAGACGTCTTGACCTACGCTTGGAAACTATGGAAGGAAGGGATACCATTAGAACTATTGGATCCGAGTTTGAGAGACAACTACTCAAGAAATGAGGTTCTTAGATGCATTCATATTGCTCTACTATGTGTTCAAGAGGATCCTGGATCTCGGCCTTCCATGACATCCATTGTTCTTATGTTGAATAGTTATTCTGTTACCTTGCCATTACCTGAAGAGCCGGCATTCTTCATGCGCACTAAAGACCATGGTATTATAATAGATAGTGATCAATCTATGAGTAAGTCTATCCAATGGTCTGCTAATGAAACATCTATATCTGAATTGCATCCACGATAG 4446 45.95 MAATKSVVLGILNFLSFIFLPSFITAQTLLQYPYRSCLPGNFTQNSAYQSSLNLLFLEFNNVAHQKTFHSTSVGLTSTDTVYGLFQCWEDVTDNCGACVATAINDTANNFCRFRKGAVSWYDGCILRYSNQSIFSDLSTVPNLMLLNTADIDADKPRFNQLVMSTFGGTVARAADASSVAEMVATREANFTFHTLYTLAQCTGDLSISNCRECLRQAIVAVPSCCANKRGGRVLYPSCYVRYEIYPFYRLTANNPPPIPPSTPKTPPLPPPPHAPSGETRSSTLIILVTVLPITVSILLFVGWCFLRQRAKKRYTTVKEDHSVVSGISTVESLQFDFNTIDAATNKFSAENRIGEGGFGAVYKGRLENGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDYFLFVQTPKRQKELDWLTRYKIINGIVRGILYLHEDSRLRIIHRGLKASNVLLDENMNPKVSDFGMARIIQVDQNEANTNRIAYGYMSPEYAMHGNFFTKSDVYSFGVLVLEIISSKKNNTFYLSGLSKDILTYTWKLWKDEIPLELLDPSLGDNYLRNEVLRCIHIALLCVQEDPSCRPSMASIVLMLNSYSFPLPLPNEPASFIRNTDNNSNQSASRSVQWSANKISIIELDPVAIFVLVLSLGIRGHAQGDPHRCFGANFTQNSTYESNLNVLLSNLSTNAPGRNGFFNSSAGRTPDAVYGLFQCGGDATNATCRNCVIEASRNIAHQYCPLSKGVVVWLDDCVLRYSDQIFFSLVSREPSFQLDNPADIGVDTTRFNQLVASTLAATVARAAASPGVMFATNQATFTSNTTLYTLAQCTGDLSNSNCQECLTRAAREIPRCCFNKEGGRVLFPSCYVLEYQYHRCVGADFVRNSAYHSSLNVLFSDFSDIAPHKIFYSTSVGRTPNDTVYGLFQCWEDVGNDNCGACVATATRDTANRYCSFKKRAEIWYDGCILRYSDQYFFSVLPTEPSQILLNMLDIGAHRARFNGLVMDTLRATTARAANASSVDDMCATQKANFTSNQTLYTLAQCTGDLSISNCRECLGRAISNIPVCCTDKQGGRILFPSCYVRYEIYPFYKLTRKKPPPIPPLASKTPPLPSPLVKEITTMESLQFDFNTIDAATHKFSAENRLGEGGFGAVYKGRLDNGQDIAVKRLSRRSLQGSEEFKNEVILLAKLQHRNLVRLLGFCLEGVEKILIYEYIPNKSLDYFLFDPERQKELDWSNRYKIINGIARGILYLHEDSRLRIIHRDLKASNVLLDGDMNPKISDFGLARIIQVDQNQGNTMRIAGTYGYMSPEYAMHGNFSTKSDVYSFGVLVLEIISSKKNNTFYLSSLAEDVLTYAWKLWKEGIPLELLDPSLRDNYSRNEVLRCIHIALLCVQEDPGSRPSMTSIVLMLNSYSVTLPLPEEPAFFMRTKDHGIIIDSDQSMSKSIQWSANETSISELHPR 1481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15262262 15294531 - MC03g0854 Mch3g1208 684111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1208 1481 FunFam Cysteine-rich receptor-like protein kinase 25 1003 1110 - -
Mch3g1208 1481 SUPERFAMILY Protein kinase-like (PK-like) 332 651 IPR011009 -
Mch3g1208 1481 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 973 1446 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Mch3g1208 1481 SMART serkin_6 347 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 SMART serkin_6 1159 1434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 ProSiteProfiles Gnk2-homologous domain profile. 898 995 IPR002902 -
Mch3g1208 1481 Gene3D Transferase(Phosphotransferase) domain 1 1235 1437 - -
Mch3g1208 1481 Gene3D Transferase(Phosphotransferase) domain 1 423 623 - -
Mch3g1208 1481 CDD STKc_IRAK 353 619 - -
Mch3g1208 1481 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Mch3g1208 1481 ProSiteProfiles Gnk2-homologous domain profile. 680 784 IPR002902 -
Mch3g1208 1481 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
Mch3g1208 1481 FunFam cysteine-rich receptor-like protein kinase 10 1235 1437 - -
Mch3g1208 1481 FunFam cysteine-rich receptor-like protein kinase 10 423 625 - -
Mch3g1208 1481 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Mch3g1208 1481 Gene3D - 893 995 IPR038408 -
Mch3g1208 1481 Gene3D - 684 784 IPR038408 -
Mch3g1208 1481 Gene3D - 1013 1110 IPR038408 -
Mch3g1208 1481 Gene3D - 30 132 IPR038408 -
Mch3g1208 1481 Gene3D - 800 892 IPR038408 -
Mch3g1208 1481 Gene3D - 143 247 IPR038408 -
Mch3g1208 1481 ProSiteProfiles Gnk2-homologous domain profile. 790 897 IPR002902 -
Mch3g1208 1481 CDD STKc_IRAK 1165 1431 - -
Mch3g1208 1481 ProSiteProfiles Protein kinase domain profile. 347 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 Pfam Protein tyrosine and serine/threonine kinase 1161 1428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 Pfam Protein tyrosine and serine/threonine kinase 349 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 FunFam Cysteine-rich receptor-like protein kinase 10 142 247 - -
Mch3g1208 1481 FunFam Cysteine-rich receptor-like protein kinase 10 1129 1234 - -
Mch3g1208 1481 SUPERFAMILY Protein kinase-like (PK-like) 1144 1461 IPR011009 -
Mch3g1208 1481 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Mch3g1208 1481 Gene3D Phosphorylase Kinase; domain 1 1136 1234 - -
Mch3g1208 1481 ProSiteProfiles Gnk2-homologous domain profile. 1001 1110 IPR002902 -
Mch3g1208 1481 Pfam Salt stress response/antifungal 902 993 IPR002902 -
Mch3g1208 1481 Pfam Salt stress response/antifungal 190 244 IPR002902 -
Mch3g1208 1481 Pfam Salt stress response/antifungal 1041 1107 IPR002902 -
Mch3g1208 1481 Pfam Salt stress response/antifungal 807 890 IPR002902 -
Mch3g1208 1481 Pfam Salt stress response/antifungal 690 782 IPR002902 -
Mch3g1208 1481 Pfam Salt stress response/antifungal 40 131 IPR002902 -
Mch3g1208 1481 MobiDBLite consensus disorder prediction 256 276 - -
Mch3g1208 1481 ProSiteProfiles Protein kinase domain profile. 1159 1434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 683 784 - -
Mch3g1208 1481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1280 1292 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1208 1481 MobiDBLite consensus disorder prediction 256 277 - -
Mch3g1208 1481 FunFam Cysteine-rich receptor-like protein kinase 10 307 422 - -
Mch3g1208 1481 ProSitePatterns Protein kinases ATP-binding region signature. 1165 1187 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1792 Mch-Chr1:18195671 Mch3g1208 Mch-Chr3:15262262 4.58E-144 dispersed
Mch1g1793 Mch-Chr1:18200454 Mch3g1208 Mch-Chr3:15262262 1.40E-137 dispersed
Mch3g1187 Mch-Chr3:15081308 Mch3g1208 Mch-Chr3:15262262 9.60E-204 dispersed
Mch3g1208 Mch-Chr3:15262262 Mch8g0038 Mch-Chr8:233794 6.21E-131 dispersed
Mch7g0916 Mch-Chr7:13667610 Mch3g1208 Mch-Chr3:15262262 1.00E-07 dispersed
Mch3g1206 Mch-Chr3:15244505 Mch3g1208 Mch-Chr3:15262262 1.21E-23 proximal
Mch3g1207 Mch-Chr3:15244862 Mch3g1208 Mch-Chr3:15262262 2.68E-281 tandem
Mch3g1208 Mch-Chr3:15262262 Mch3g1209 Mch-Chr3:15295385 6.17E-175 tandem
Mch4g1442 Mch-Chr4:17930232 Mch3g1208 Mch-Chr3:15262262 5.72E-15 transposed
Mch8g1491 Mch-Chr8:11300880 Mch3g1208 Mch-Chr3:15262262 2.90E-92 transposed
Mch9g1314 Mch-Chr9:15430599 Mch3g1208 Mch-Chr3:15262262 9.14E-11 transposed
Mch3g1208 Mch-Chr3:15262262 Mch4g0219 Mch-Chr4:1420937 6.85E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77271 PF07714 PK_Tyr_Ser-Thr 8.60E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1208 - - - 0.0