Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1209 ATGCTCAATTTTCCCATTTTCCTCTTCCTCTTCCTCTTCGCCTTCGCCATCCATGGACACGCTCAGACTCTTCACCGCTGCATACCCACAAATTTCACCCAAAACAGCACCTACGAATCCACCCTTAATCTTCTCCTTTCAAATCTCTCCACCAACGCCCCCGGAACAAACGGATTCTTCAATTCTTCCGCCGCCCCAACACCAGACGACACCGTTTACGCCCTGTTTCAGTGTCGTGGAGACACCACCAACACCTCCTGCCGAAACTGCGTAATGGAAGCTACCAGAAACGTAGCCCATCAGTTCTGCCCCTTCAGAAAAGGCGCTGTGGTCTGGTACGACGACTGCCTATTGCGTTACTCCGACCAAATTTTCATTTCCGTGGTGTCCACACAGCCAAGTTACGGCTTGGAAAACCCAGCTGATATTGGCGTCGACACGCCTCGCTTCAACCAATTAGTGATGTCCACGTTGACAGCCGCCGCGGGCAACGCCAGTAGTCGGGTGATGGCCCAAATGTTGGCAACCCAGGAGGCAATTTTCACGCCAAACACAACGCTTTACGCATTGGCTCAGTGCACCGCCGATTTGTCGAATTCCAATTGCGATGAATGCCTAACGCGTGCCATCAGGGGAATTCCGGGTTGTTGCAATAACAAGCGCGGTGGCAGAGTTCTGTTCCCCAGCTGCTACGTTCGTTACGAAATTTACCCCTTTTACAGACTCAAAATGACCAATTTTTCTTTACCGCCCCCACCAACAGTAACTCCCCCTTCCATTTCCACAGCCCCATCAGGGGAAAGCAGATCCTCGACTGTGATAATTGTAGCCATTGTTGCTCCGATTACTGTCTCCATTCTGCTTTTCGTTCTGGGCTGGTGTTTCCTTCGCCGAAGAGGGAAAAAGAAGTACACTGCTGGAAAGGAGGATTGTGTTTTCAATGAGATCACCACTGACGAATCTTTGCAATTTGATTTCAAAACGATCGATGCTGCTACTAACAAATTCTCAGAGGAAAACAGGTTGGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGTAGACTTGATAATGGACAAGAGATAGCAGTGAAAAGACTATCAAGAGGATCTATGCAAGGTTCTGAAGAGTTCAGGAATGAGGCCATGTTGGTTGCTAAGCTTCAACACAGAAATCTTGTAAGGTTATTGGGATTTTGCTCTGAGGGTGGAGAAAAGATACTCATCTATGAATACATTCCCAACAAAAGCCTTGACTATTTCCTATTTGATACCGAGGGACAGAGAGTGTTAGATTGGTTGGGGCGATATAAGATTATCATCGGGATTGCTCGAGGAATGTTATATCTACATGAAGATTCCCGACTTCGAATCATTCATCGTGATCGAAAAGCTAGTAACATCTTATTAGATGAAGATATGAATCCAAAGATTTCAGATTTTGGAATAGCAAAAATTATCCAAGTTGACCAGACTCAGGGGAAATACAAGTAG 1491 46.68 MLNFPIFLFLFLFAFAIHGHAQTLHRCIPTNFTQNSTYESTLNLLLSNLSTNAPGTNGFFNSSAAPTPDDTVYALFQCRGDTTNTSCRNCVMEATRNVAHQFCPFRKGAVVWYDDCLLRYSDQIFISVVSTQPSYGLENPADIGVDTPRFNQLVMSTLTAAAGNASSRVMAQMLATQEAIFTPNTTLYALAQCTADLSNSNCDECLTRAIRGIPGCCNNKRGGRVLFPSCYVRYEIYPFYRLKMTNFSLPPPPTVTPPSISTAPSGESRSSTVIIVAIVAPITVSILLFVLGWCFLRRRGKKKYTAGKEDCVFNEITTDESLQFDFKTIDAATNKFSEENRLGEGGFGAVYKGRLDNGQEIAVKRLSRGSMQGSEEFRNEAMLVAKLQHRNLVRLLGFCSEGGEKILIYEYIPNKSLDYFLFDTEGQRVLDWLGRYKIIIGIARGMLYLHEDSRLRIIHRDRKASNILLDEDMNPKISDFGIAKIIQVDQTQGKYK 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15295385 15298254 - MC03g_new0355 Mch3g1209 684112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1209 496 FunFam Cysteine-rich receptor-like protein kinase 28 23 124 - -
Mch3g1209 496 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
Mch3g1209 496 FunFam Cysteine-rich receptor-like protein kinase 10 134 239 - -
Mch3g1209 496 ProSiteProfiles Gnk2-homologous domain profile. 20 125 IPR002902 -
Mch3g1209 496 Gene3D - 20 125 IPR038408 -
Mch3g1209 496 Gene3D - 142 239 IPR038408 -
Mch3g1209 496 Pfam Protein tyrosine and serine/threonine kinase 339 491 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1209 496 FunFam Os07g0541700 protein 412 496 - -
Mch3g1209 496 Gene3D Transferase(Phosphotransferase) domain 1 412 496 - -
Mch3g1209 496 ProSiteProfiles Protein kinase domain profile. 336 496 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1209 496 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524(InterPro)
Mch3g1209 496 SUPERFAMILY Protein kinase-like (PK-like) 316 491 IPR011009 -
Mch3g1209 496 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 98 491 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch3g1209 496 FunFam Cysteine-rich receptor-like protein kinase 10 298 411 - -
Mch3g1209 496 ProSiteProfiles Gnk2-homologous domain profile. 131 239 IPR002902 -
Mch3g1209 496 Pfam Salt stress response/antifungal 30 123 IPR002902 -
Mch3g1209 496 Pfam Salt stress response/antifungal 155 236 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1206 Mch-Chr3:15244505 Mch3g1209 Mch-Chr3:15295385 6.24E-23 dispersed
Mch3g1209 Mch-Chr3:15295385 Mch9g0055 Mch-Chr9:443241 9.37E-97 dispersed
Mch4g0221 Mch-Chr4:1430210 Mch3g1209 Mch-Chr3:15295385 4.11E-36 dispersed
Mch9g1314 Mch-Chr9:15430599 Mch3g1209 Mch-Chr3:15295385 3.58E-11 dispersed
Mch3g1208 Mch-Chr3:15262262 Mch3g1209 Mch-Chr3:15295385 6.17E-175 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77272 PF07714 PK_Tyr_Ser-Thr 3.60E-32 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1209 - - - 0.0