Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1219 ATGTTTGGGGGCCTTGATTTTGAAGATCAGCAGGATCTGCTTCTGGAGATGACACAGAAAAACTTCGAAAGCGAACTTGAAAATTTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTCGGGAGAGGACCAAAGTCAGCACAATCACAGCAATAAGAGGAAGCGTTACCATCGCCACACGCAGCTCCAAATCCAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCTCACCCAGATGACAAGCAAAGAAAGAACCTCAGCCGGGAGCTAGGGCTCGAACCCCTACAAGTCAAATTCTGGTTTCAAAACAAGCGAACCCAAATGAAGGCTCAACATGAAAGGCATGAGAATGCAATTTTGAAAGCTCAGAACGAGAAACTGAGAGCAGAGAACATGAGGTACAAGGAAGCTCTTAGCAATACCAGTTGCCCTAACTGTGGAGGTCCTTCTGCCCTTGGTGAGATGTCCTTTGATGGCCAACATTTGAGACTTGACAATGCTCATTTAAGAGAAGAGATTGAGAGATTAAACACAGTTGCAGGGAAATATGGGCCGGGGAAGCCATGGGGCTCCCGTTCACATCTTCAATCTCATCATGTTCCTTCTCGAACCCTTGATCTGGGCAGCGTTGGCAGATTAAAGCCCCAACCACCTGATTTCATAGGAGACATGTTGAAGTCCGTCACTACCGAAATCGATAAGCCAGTGATCGTTGAGCTCGCCGTTTCAGCCATGGAAGAAGTCTACACAATGGCCCAAGCAGGGGAAACCCTGTGGGTCCCTGCACCCAATAACTCCACCGAAATTCTCAACCAAGACCAATACCTCACCACTTACTCTACAGGAATCATTGGCCCCAGAATTTTAGGCCTCACTTCTGAAGCTTCAAGGGAATCTTCCATTGTTGCTTTCAATCATCTGAAACTCGTCGACATTCTCATGGATGTGAATCAGTGGTCAAGCATATTTTGTGGCATTGTTTCAAAAGCATTGACCCTGGAAGTCTTGTCCCCTGGAGTTGGTGGCAACTATAATGGAGCTCTACAAGTGATGAGTGCTGAGTTCCAGGTCCCGTCTCCTCTTGTTCCCACTCGGGAAAATTACTTCGTTAGGTACTGTAAGCAGCAGGGGGACGGGAGTTGGGCTGTCGTCGACGTTTCACTCGACTATTTACGCCCCACTCCAATTTCAAAGACTCGAAGAAGACCATCCGGTTGTTTGATCCAACAACTACCAAATGATTCCTCAAAGATCACATGGGTGGAACATGTTGAAGTGGATGTTCGAACCGTACACAATTTGTACAAACGGCTTGTCACTTCTGGGCTTGCTTTTGGCGCCAAACGATGGGTGGCTACTCTGGATCGACAGTGCCAACGTCTAGCCAATTCCTTGGCTACCAATATTCCTGCACTAGATATATGCGTGGTAACAGGGCAAGAGGGGAGAAAAAGCGTTATGAAGCTAGCGGAGAGGATGGTGAGGAGCTTCTGCAGTGGCGTGGGGGCTTCCTCTGCTCACAACTGGACCACCTTATCCGCCATCGGCTCCGACGACGTTCGGGTCATGGCCCGGAAGAGCCTCGACGACCCGGGCAGGCCTCCCGGAATCGTCCTAAATGCAGCCACTTCCTTCTGGATTCCAATTCCCCCAAACAGGGTCTTCGATTTCCTCCGAGATCAAAACACCCGCAGCCAGTGGGACATACTTTCAAATGGTGGGTTGGTCCAAGAAATGGCTCGAATTGGGAACGATGGGAACCCAGGAAATTGTGTGTCGTTGCTTCGTGTGAACAGTGCGAATTCAAGCCAGAGCAACATGCTGATACTACAGGAGAGCTGCAGCGACGCCAGTGGGTGCTACGTAATGTACGCCCCAGTGGACAGCATTGCGATGAACATGGTGTTGAGCGGCGGGGACCCTGATTACGTTGCTCTGTTGCCGTCTGGGTTCGCGATACTGCCTGATGGGCCTGATGGGCCGGGGCCCAATGGAGGAGGAGTTCTGGAGTTCGGGTCGGGTGGGTCGTTGTTGACGGTTGCATTTCAGATATTGGTGGATTCGATTCCTACGGCAAAACTGTCGCTGGGATCGGTGGCGACGGTGAACAGCCTAATCAAGTGCACGGTGGAGAGGATTAGAGCTGCAGTGATGTGCGACCACCCA 2184 50.41 MFGGLDFEDQQDLLLEMTQKNFESELENFGEDEFESRSVTDAMEAPSGEDQSQHNHSNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKNLSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPSALGEMSFDGQHLRLDNAHLREEIERLNTVAGKYGPGKPWGSRSHLQSHHVPSRTLDLGSVGRLKPQPPDFIGDMLKSVTTEIDKPVIVELAVSAMEEVYTMAQAGETLWVPAPNNSTEILNQDQYLTTYSTGIIGPRILGLTSEASRESSIVAFNHLKLVDILMDVNQWSSIFCGIVSKALTLEVLSPGVGGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQGDGSWAVVDVSLDYLRPTPISKTRRRPSGCLIQQLPNDSSKITWVEHVEVDVRTVHNLYKRLVTSGLAFGAKRWVATLDRQCQRLANSLATNIPALDICVVTGQEGRKSVMKLAERMVRSFCSGVGASSAHNWTTLSAIGSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFDFLRDQNTRSQWDILSNGGLVQEMARIGNDGNPGNCVSLLRVNSANSSQSNMLILQESCSDASGCYVMYAPVDSIAMNMVLSGGDPDYVALLPSGFAILPDGPDGPGPNGGGVLEFGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNSLIKCTVERIRAAVMCDHP 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15350213 15355191 + MC03g0864 Mch3g1219 684122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1219 728 CDD START_ArGLABRA2_like 240 465 - -
Mch3g1219 728 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Mch3g1219 728 SUPERFAMILY Bet v1-like 236 468 - -
Mch3g1219 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 725 IPR042160 -
Mch3g1219 728 MobiDBLite consensus disorder prediction 25 65 - -
Mch3g1219 728 Coils Coil 111 146 - -
Mch3g1219 728 SMART HOX_1 58 121 IPR001356 GO:0003677(InterPro)
Mch3g1219 728 SUPERFAMILY Homeodomain-like 43 117 IPR009057 -
Mch3g1219 728 Pfam Homeodomain 60 115 IPR001356 GO:0003677(InterPro)
Mch3g1219 728 FunFam Homeobox-leucine zipper protein GLABRA 2 245 465 - -
Mch3g1219 728 MobiDBLite consensus disorder prediction 25 39 - -
Mch3g1219 728 CDD homeodomain 59 118 IPR001356 GO:0003677(InterPro)
Mch3g1219 728 FunFam Homeobox-leucine zipper protein HDG1 47 133 - -
Mch3g1219 728 SUPERFAMILY Bet v1-like 487 720 - -
Mch3g1219 728 Gene3D - 303 466 IPR023393 -
Mch3g1219 728 SMART START_1 245 466 IPR002913 GO:0008289(InterPro)
Mch3g1219 728 Gene3D - 46 134 - -
Mch3g1219 728 ProSiteProfiles START domain profile. 236 469 IPR002913 GO:0008289(InterPro)
Mch3g1219 728 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch3g1219 728 Pfam START domain 246 466 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1219 Mch-Chr3:15350213 Mch7g0709 Mch-Chr7:11725418 8.33E-232 dispersed
Mch1g1771 Mch-Chr1:18089436 Mch3g1219 Mch-Chr3:15350213 0 wgd
Mch11g1166 Mch-Chr11:8194781 Mch3g1219 Mch-Chr3:15350213 4.95E-121 wgd
Mch2g0634 Mch-Chr2:4332703 Mch3g1219 Mch-Chr3:15350213 0 wgd
Mch3g1219 Mch-Chr3:15350213 Mch4g0233 Mch-Chr4:1496817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43047 PF01852 START 7.40E-49 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1219 K09338 - csv:101212604 1149.42