Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1267 ATGGCCTCCACTTGCACACCCCACCTTGTTCTATGCCTTGTATTGGTTCTATCATTCATCAATTCCTCCCTTCAAGATTACTACACCCCGGACAGGCAAAATATGAATGTAATCGACTCTTGCTGGCGGAGGAGGTCTAACTGGGCCGCCAACCGCCGCGCCCTGGCCGATTGTGCCATCGGCTACGGCAACGACGCAATCGGAGGGAAATTTGGAACCATCTACGTAGTCACCGACCCCTCCGATAACCCATCAAACCCAAAACCAGGAACTCTACGCTACGGCGTGATCCAAACCAAGCCGCTATGGGTTGTGTTCGCAAAGAATATGGTCATTGTGCTGAAAAATGAGCTGATGGTGAACAGTTTCAAGACCATCGACGGACGTGGGGTTAAAGTTGAAATTGCGTACGGGCCTTGCATTACGGTGCAAGGGGTGAGCCATGTTATTATTCATGGAATCAGCATCCACGATTGCAAGCCTGGCAAGCCTGGGCTCGTTAGAGACACCGTTACGCACGTGGGAGAACGTCACGGCAGTGACGGTGATGCCATTGCTATATTCTCTTCTTCCCACGTGTGGATTGATCACTGCTTTTTGGCTCGCTCCAGTGATGGTCTCATTGATGTCATTCATGCTTCCACTGCTGTCACCATCTCCAATAACTACTTCTCCCAACATGACAAAGTGATGCTGCTTGGGCATAATGATGGGTTCACTGATGATAAAATTATGAGAGTCACCATCGTCTTCAACCGCTTCGGCGCTGGCCTCATCGAGAGAATGCCGAGGGTTAGGTTTGGTTATGCCCATGTTGCCAACAATAGATACGATGAGTGGAAGATGTATGCGATTGGTGGAAGTGCAAACCCCACAATCTTCAGCGAAGGAAACTACTTTGTGGCTCCCCAAAATTCTAATGCCAAGCAGGTTACGAAGAGGGAAGTTAATAATGGGTGGAAGAATTGGAAATGGAGATCCTCTAGAGATGTGTTCTTAAACGGTGCTTATTTTGTGCAATCTGGATGGGGAAGTTGCAGCCCCATTTACAGCAGAGCTCAGTCTTTTCCGGTGGCTCCAGGCTCTATGGTTCCCGCTTTGACTGCAAATGCTGGCCCTCTTCCTTGTATTGTTGGCAAATCTTGCTGA 1149 49.09 MASTCTPHLVLCLVLVLSFINSSLQDYYTPDRQNMNVIDSCWRRRSNWAANRRALADCAIGYGNDAIGGKFGTIYVVTDPSDNPSNPKPGTLRYGVIQTKPLWVVFAKNMVIVLKNELMVNSFKTIDGRGVKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKPGLVRDTVTHVGERHGSDGDAIAIFSSSHVWIDHCFLARSSDGLIDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVQSGWGSCSPIYSRAQSFPVAPGSMVPALTANAGPLPCIVGKSC 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15646586 15648422 - MC03g_new0368 Mch3g1267 684170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1267 382 SUPERFAMILY Pectin lyase-like 35 373 IPR011050 -
Mch3g1267 382 SMART amb_all 109 306 IPR002022 -
Mch3g1267 382 Gene3D - 35 375 IPR012334 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 353 376 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 81 106 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Mch3g1267 382 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Mch3g1267 382 PANTHER PECTATE LYASE 18-RELATED 14 379 IPR045032 GO:0030570(InterPro)
Mch3g1267 382 Pfam Pectate lyase 116 300 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1267 Mch-Chr3:15646586 Mch3g1395 Mch-Chr3:16452225 1.88E-145 dispersed
Mch3g1773 Mch-Chr3:18972968 Mch3g1267 Mch-Chr3:15646586 1.38E-99 transposed
Mch1g1736 Mch-Chr1:17899341 Mch3g1267 Mch-Chr3:15646586 2.19E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1267 K01728 - csv:101211379 701.049