Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1300 GGAACCTATGGATACCTTGCCCCAGAATTTGTCTACAGAAACGAGCTTACAACAAAGAGTGATGTCTACAGTTTTGGGGTGCTGCTGCTTGAAATTGTGACCGGTCGAAGGCCCGCACAAGCAGTTGATTCTGTCGGTTGGCAGAGCATTTTCGAATGGGCAACGCCTCTCGTGCAGGCTCACTGTTACCTAGATCTCTTGGATCCTCATATAACCGCCACTCCGACTTCTGAAATTCCGGAGGCTGGTGTTGTTCAGAAGGTGGTTGACCTTGTGTATGCTTGCACGCAGCATGTCCCATCCATGCGCCCTAGAATGTCTCATGTTGTTCATCAGTTG 339 49.85 GTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHCYLDLLDPHITATPTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQL 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15904144 15904482 - MC03g0919 Mch3g1300 684203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1300 113 PANTHER OS01G0253100 PROTEIN 1 113 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch3g1300 113 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Mch3g1300 113 SUPERFAMILY Protein kinase-like (PK-like) 1 111 IPR011009 -
Mch3g1300 113 Pfam Protein tyrosine and serine/threonine kinase 5 113 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1300 113 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1300 Mch-Chr3:15904144 Mch5g1974 Mch-Chr5:19536445 6.98E-13 dispersed
Mch3g1300 Mch-Chr3:15904144 Mch6g0134 Mch-Chr6:803128 5.57E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77274 PF07714 PK_Tyr_Ser-Thr 5.60E-12 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1300 - - - 0.0