Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1319 ATGGCAGCCTTTTCATATCAATACCAACCGTTTCTCCTTGACTCCGTATTCATGCCCACCAATCCCCTAAAAATGGCTGCCTTTTTGGATGACCCAAATTTCAACGCCAATTGCTTCTCTCAATTCTTCCCCCAAGAACCACCCATCCACCATTTCTCGCCCGACCTCTCCAAACAGAGCCCCGAATCTTCCACTCTCGTCGAGAAATCCGACAGCGCCGAGCCGCCGCAGCTCAAGGCCGTCACTGTCACTGTCACTTCCCCTTGCAGTAAGAAGAGGAAGAGCCGCAATAATAATTCCTCCGCCAGCTCCACTCAATCCAAGGGCGCCACGGAGAGCACGGGGAAGAAGCAGAAGATGGCTAAGGGGGAAGATGAAAGGAAAGAAGGAGATCAAAAGCCCAAAACTGGGAAGAAAGAGGACAAGAAAATTTCAGAGGAAGGTTACATTCATGTCAGAGCCCGTAGGGGCCAGGCCACGGACAGCCACAGTCTTGCAGAGAGGGTGAGACGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCGGGTTGCGACAAGGTAACAGGGAAGGCCCTCATGTTGGATGAAATTATCAATTATGTGCAGTCCCTACAAAATCAAGTCGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCCATTTTCTTCGACTTCAGAATGGACTTGGATGGCCTCATGATCCAGCCAGAGACGTCGTTAAGTAGTATAACTCCACAGTTGCCGGCCATGGCTCAATGCAGCGTCGTCCCACCGCCGGCGTTGATCGACACCACCACTCCGACAACCCCATCTCCGGCAATCTCCGCCGCGAGTAGCTATCCCCTGATGGACCATTCAGCTAATTTGTTTCTTCTTCATCAAGGGATGAGCCCAAACGCCTACTCTCAGTCTCAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCCTCAGGGATTGGCGACAATTTATGTTACTTCCATTAA 1023 49.76 MAAFSYQYQPFLLDSVFMPTNPLKMAAFLDDPNFNANCFSQFFPQEPPIHHFSPDLSKQSPESSTLVEKSDSAEPPQLKAVTVTVTSPCSKKRKSRNNNSSASSTQSKGATESTGKKQKMAKGEDERKEGDQKPKTGKKEDKKISEEGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETSLSSITPQLPAMAQCSVVPPPALIDTTTPTTPSPAISAASSYPLMDHSANLFLLHQGMSPNAYSQSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15993931 15996414 + MC03g_new0386 Mch3g1319 684222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1319 340 Gene3D - 155 225 IPR036638 GO:0046983(InterPro)
Mch3g1319 340 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 273 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch3g1319 340 SMART finulus 164 214 IPR011598 GO:0046983(InterPro)
Mch3g1319 340 CDD bHLH_AtBPE_like 148 233 - -
Mch3g1319 340 MobiDBLite consensus disorder prediction 115 149 - -
Mch3g1319 340 MobiDBLite consensus disorder prediction 49 149 - -
Mch3g1319 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 224 IPR036638 GO:0046983(InterPro)
Mch3g1319 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983(InterPro)
Mch3g1319 340 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983(InterPro)
Mch3g1319 340 MobiDBLite consensus disorder prediction 56 114 - -
Mch3g1319 340 FunFam Basic helix-loop-helix transcription factor 155 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1319 Mch-Chr3:15993931 Mch9g1063 Mch-Chr9:9814014 3.57E-37 dispersed
Mch3g1319 Mch-Chr3:15993931 Mch9g2038 Mch-Chr9:21596402 5.42E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43050 PF00010 HLH 6.50E-07 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1319 - - - 0.0