Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1322 ATGGGTTGCGTTCTTGGCAGACAAGTCGCCGACGGTCGCCGGGGCGCATCCGGACCTCACCGTAGCCACCGGACCACCGATCACCAGTCTCGTGCCGATGGAGTTAATGGCGATAGAGATAAGAAACAGGTGACTTCGGCGGAGAAGCAGGGAGTTCGGCAGGACGTGGATTCATTGTCCATTGAGCGCCGGAGACCTGCGCCGGGGCTTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGAGGTCGCCGGCGAGGTGATTCAAGGCTGGACACCTCGTCGAGCCAATACATTTGAGAAGCTCGCCAAGATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGATGGATCTTATTACTGGAAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAGCCGGAGAGCGTAAGATTTATGGCCAGAGAGATTCTGGTCTTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTGGAAGGATTGGTTACTTCGAGAATGTCTTGTAGTCTTTACTTAGTCTTCGAGTATATGGAACACGACCTCGCCGGACTTTCTGCCGGTCAAGGAGTCAAGTTCACAGAACCTCAGGTCAAATGCTATATGAAGCAACTATTGTCTGGGCTTGAGCACTGCCACAACCGAGGTGTTTTGCATCGTGATATAAAGGGCTCCAATTTGCTAATTGATAATGAAGGAATACTGAAAATAGCTGATTTTGGGTTAGCTACTTTTTTTGATCCTGAGCAGAAGCAGCATATGACTAGCCGAGTAGTAACGCTTTGGTACCGTCCGCCGGAACTATTGCTTGGGGCTACTGTTTATGGTATTGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCTGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTATAGATTGCCAAATGCAACTCTGTTCAAACCCCAACAACCGTACAAACGCTGCATTGCGGAAACGTTCAAGGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTTCTATTGAGCCGCTTGCTTGTGAACCATCAAGTCTACCGAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCCAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGCTGTTGATGGTGGAGGCAGGAGAGTAAAAGTACGGGATCGGGTTGGTCGGGCTATCCCGGCTCCTGAAGCTAATGCAGAGATTCAAACAAACTTAGATAGGTGGAGAAATGTGACAAAAGCAAATGGTAAGAGCAAAAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACACGAGACGTCTGAGAAAGGCCATTTTTCATTTGGGGCAGCTGATACATCATTCGGCTCTTCCATTTTTAGTTCCAAGTCTGGATCTGTTACAAGTTCAGGAGCTCCCGGGGGACCTTCCCGGAGGAAGAAAGCCGATAAAGATAACCCCTCGGTGTCTTCGTCTCGAAAATTAATCCGTGCACTCAAGCCATCAATTGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA 1701 48.32 MGCVLGRQVADGRRGASGPHRSHRTTDHQSRADGVNGDRDKKQVTSAEKQGVRQDVDSLSIERRRPAPGLCQRNEQGWPSWLLEVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKAMDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQKQHMTSRVVTLWYRPPELLLGATVYGIGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYRLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFSIEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATAVDGGGRRVKVRDRVGRAIPAPEANAEIQTNLDRWRNVTKANGKSKSEKFPPPHQDGAVGYPPHETSEKGHFSFGAADTSFGSSIFSSKSGSVTSSGAPGGPSRRKKADKDNPSVSSSRKLIRALKPSIGLSMDLLFRGK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16018860 16023275 + MC03g_new0389 Mch3g1322 684225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1322 566 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Mch3g1322 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1322 566 MobiDBLite consensus disorder prediction 1 59 - -
Mch3g1322 566 MobiDBLite consensus disorder prediction 512 547 - -
Mch3g1322 566 PANTHER CELL DIVISION PROTEIN KINASE 100 385 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch3g1322 566 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1322 566 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1322 566 MobiDBLite consensus disorder prediction 415 441 - -
Mch3g1322 566 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Mch3g1322 566 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Mch3g1322 566 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Mch3g1322 566 SUPERFAMILY Protein kinase-like (PK-like) 94 386 IPR011009 -
Mch3g1322 566 SMART serkin_6 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1322 566 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Mch3g1322 566 MobiDBLite consensus disorder prediction 467 500 - -
Mch3g1322 566 MobiDBLite consensus disorder prediction 14 48 - -
Mch3g1322 566 CDD STKc_CDK9_like 101 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1062 Mch-Chr1:13578296 Mch3g1322 Mch-Chr3:16018860 1.02E-140 dispersed
Mch3g1322 Mch-Chr3:16018860 Mch6g1637 Mch-Chr6:18103025 9.47E-232 dispersed
Mch3g1322 Mch-Chr3:16018860 Mch5g0670 Mch-Chr5:4518006 2.47E-240 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77277 PF00069 Pkinase 3.50E-67 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1322 K08819 - csv:101205716 993.03