Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1347 ATGGCGACGACCACCACCAGTATAGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCGGTGGGGAGGATAGAGTTTTGGCTACCGCTCAGCAGATAGTCAAGAGCCTCAACACCCCCAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTCGACAATCGTCTCTCTAGTATCACCAGTTTGGTCGACGGTGGGGAATCTAAGAGGGAGGGAGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCCGGTACTGGAGCTTCTAGAAACTCTCTCTATTGGGATGACTCACCGGATGAGGCGGCTGAGTACTTGTCTGCGGTCGATGATATCATTCAATGGATGGACGACATGTCAATTCGTTCTGATTCTGCTGAAATCGCGGAGCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTCCGTCATATGTTGATTCGAAGCACGGTCCCTCTTGATGCCGAGCACCTCTACGGTTCAATTCGTAAGGCATCCCTCTCTTTCGCTTCTCACGACTGCGAAAATTCCGATGAATTCGAGTCGTTTGCCGATGTTGACCGTGGTTCCGGAATTTTCCATGAGCGCGGTGTGAGTTTGGGCGACGATTTGCGGGTCGATTTGATCCATCCTGACGCTGTCGTCGATTTGAAAGAGATCGCAGATCGGATGATTCGTTCTGGATATGAAAAAGAGTGTGTTAATGTGTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGAGTTGAGAAGCTAAGTATTGAGGATGTCCAGAAAATTGAATGGAGAAATTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCACTGTTCGAGTACTTTTGACGGGCGAGAAACGGCTGTGTGACTATATCTTTAGTGGGTCTGATGACTCTGAGGAAGCTTGCTTCAATGAGACTGCAAAAGGGTCCATCAGGCAATTACTGAATTTTGGAGAGGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGCATATGTTTTACCGGACTTGCAGGCTATGGTCACTGAAGAATTTGTGATTGAGGAGGCGCAAGGAGTGCTTTCTCGACTGGGAGAGGCCGCTAGAGGTACATTTGCCGAATTTGAGAATGCTGTTCGGAGCGAGACTTCTAAGAAAACAATGTTGAACGCTGAGATCCACCCGCTCACTCGATATGTCATGAATTACTTGAGATTGCTTGTCGTTTATAGTAAGACTCTGGATGCACTTTTAGAAAACGAGGATGACGATCTGCATCATCTAGGGGATGATGGTGCTGACAATTTGGAGTTAGAAACTATGTCTCCTTTAGCTCGGCGACTGTTTTCATTGATATCATCATTGGAGTCCAATCTAGAGAGAAAATCCAAACTTTATGGCGATGATTCGATACAATATATATTTCTCATGAATAATATACAATACATTGTGCAGAAAGCGAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGCAAGCGCCGGGGCCAGGTTCGCATATATGCAACAAACTATCTCAGGGCCTCTTGGGGCAAACTTTTATCTTTCTTGAAGGATGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAATTCAGACAGCTTGGAAGGTGGCTGATCCTCAACTACGGGAAGAGCTCCGAATTTCAGTATCGGCAAAGGCGTTACCTGCCTATCGTGCCTTCTTGGGAAGGCATGAAAGTCAGTTAGAGAGTACAAGACATGGCGGGAGGTATTTAAAGTACTCATCTGATGACTTGGAGAACTATTTATTGGATTTGTTTGAAGGATCACCATGTGTTATACACCACTTACGAAGAAAAAGTAGTTCA 1983 46.29 MATTTTSIGGGGGGGGGGGGEDRVLATAQQIVKSLNTPKEVRDDMLLIFSSFDNRLSSITSLVDGGESKREGDRFEAAEKVILRWDSGTGASRNSLYWDDSPDEAAEYLSAVDDIIQWMDDMSIRSDSAEIAERAENAIQIAMSRLEDEFRHMLIRSTVPLDAEHLYGSIRKASLSFASHDCENSDEFESFADVDRGSGIFHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGVEKLSIEDVQKIEWRNLDEKMKKWIQAVKVTVRVLLTGEKRLCDYIFSGSDDSEEACFNETAKGSIRQLLNFGEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVTEEFVIEEAQGVLSRLGEAARGTFAEFENAVRSETSKKTMLNAEIHPLTRYVMNYLRLLVVYSKTLDALLENEDDDLHHLGDDGADNLELETMSPLARRLFSLISSLESNLERKSKLYGDDSIQYIFLMNNIQYIVQKAKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKDEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRIQTAWKVADPQLREELRISVSAKALPAYRAFLGRHESQLESTRHGGRYLKYSSDDLENYLLDLFEGSPCVIHHLRRKSSS 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16160475 16162457 + MC03g0955 Mch3g1347 684250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1347 661 FunFam Exocyst subunit Exo70 family protein 91 653 - -
Mch3g1347 661 Pfam Exocyst complex component Exo70 N-terminal 75 155 - -
Mch3g1347 661 PANTHER EXOCYST COMPLEX PROTEIN EXO70 29 648 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Mch3g1347 661 MobiDBLite consensus disorder prediction 1 22 - -
Mch3g1347 661 Coils Coil 129 149 - -
Mch3g1347 661 Gene3D Exocyst complex component Exo70 93 651 - -
Mch3g1347 661 Pfam Exo70 exocyst complex subunit C-terminal 283 643 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Mch3g1347 661 SUPERFAMILY Cullin repeat-like 75 646 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1347 Mch-Chr3:16160475 Mch3g1694 Mch-Chr3:18525102 2.01E-120 dispersed
Mch3g0050 Mch-Chr3:528490 Mch3g1347 Mch-Chr3:16160475 4.03E-122 transposed
Mch8g0626 Mch-Chr8:4514228 Mch3g1347 Mch-Chr3:16160475 3.07E-28 transposed
Mch8g1301 Mch-Chr8:9489431 Mch3g1347 Mch-Chr3:16160475 7.34E-144 transposed
Mch8g2403 Mch-Chr8:27097657 Mch3g1347 Mch-Chr3:16160475 1.62E-137 transposed
Mch3g1347 Mch-Chr3:16160475 Mch6g0064 Mch-Chr6:380659 1.34e-319 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1347 K07195 - csv:101212753 1133.24