Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1350 ATGGCGGTCTCATTGCGTGACGTCAAGTCGGCAGCTGGTCTGAAGAATCTCGACGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAAGCTTCAAAAGATGACATTGCTGTTTATGAAGCTCTCTCCAAACCCGTGTCCAGCGAATATGTTAACGTATCTAGGTGGATCAATCACATCGAAGCACTCTTGAGAATTTCTGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCCAATCAGCAGAAGCAATTGCAACCCCACCGGCCGCAGATGCAAAGGCTAGTGCTGCTGCTGATGACGATGACGACGATGATATGGATCTATTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCCGAGGAGCGTGCAGCTTCCGTCAAGGCTTCTGGAAAGAAGAAAGAAAGTGGCAAGTCATCAGTTCTGATGGATATAAAGCCATGGGACGATGAGACTGACATGAAGAAGCTTGAAGAGGCTGTAAGAGGCGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCCAAACTTGTCCCTGTTGGATATGGTATAAAGAAATTGCAGATAATGCTCACAATTGTGGACGACCTAGTGTCTGTTGACAATCTCATTGAGGAGCATCTGACAGTTGAACCCATAAACGATTATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATC 684 46.49 MAVSLRDVKSAAGLKNLDEYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVSRWINHIEALLRISAVFGEGSGVKFQSAEAIATPPAADAKASAAADDDDDDDMDLFGEETEEEKKAAEERAASVKASGKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINDYVQSCDIVAFNKI 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16173515 16175082 - MC03g0958 Mch3g1350 684253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1350 228 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 217 228 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1350 228 MobiDBLite consensus disorder prediction 90 133 - -
Mch3g1350 228 SUPERFAMILY GST C-terminal domain-like 10 69 IPR036282 -
Mch3g1350 228 Coils Coil 111 131 - -
Mch3g1350 228 MobiDBLite consensus disorder prediction 98 112 - -
Mch3g1350 228 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 103 111 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1350 228 FunFam Elongation factor 1-delta 1 3 78 - -
Mch3g1350 228 Pfam EF-1 guanine nucleotide exchange domain 141 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1350 228 Gene3D - 2 76 - -
Mch3g1350 228 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 228 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Mch3g1350 228 SMART EF1_GNE_2 139 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1350 228 FunFam Elongation factor 1-beta 1 like 133 228 - -
Mch3g1350 228 MobiDBLite consensus disorder prediction 113 133 - -
Mch3g1350 228 Gene3D - 132 228 IPR014717 -
Mch3g1350 228 CDD EF1B 137 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1350 228 SUPERFAMILY eEF-1beta-like 136 228 IPR036219 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1350 Mch-Chr3:16173515 Mch3g1353 Mch-Chr3:16201339 9.12E-109 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1350 K03232 - csv:101215489 336.65