Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1353 ATGGCGGTCGCACTCCATGATGTCAAGTCCGCAGCCGGTTTGAAGAAACTGGACGAGTACCTGCTTAGTCGTAGCTACATTAGCGGGTATCAGCCATCTAAGGATGACGTTACCGTTTACGAAGCTCTCTCCAAACCCGTATCCGGCGAATATGTCAACGTGTCTAGGTGGAGCAATCACATCGCAGCGCTCTTGAGAGTTTCTGCTGTTTTTGGAGAGGGTTCTGGCGTTAAATTCCAATCGGCGGAAGCAATTGCAACCCCACCGGCCGCAGACGCAAAGGCTGCTGCTGATGATGACGACGATGACGATGATGTCGATCTCTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCTGAGGAGCGTGCGGCTGCTATCAAGGCTTCTGCAAAGAAGAAGGAGTCTGGTAAGTCATCAGTTCTGATGGATATTAAGCCTTGGGACGATGAGACTGACATGAAGAAACTAGAAGAGTCTGTTAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAACTTGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACCTTGTGTCTGTTGACACTCTCATTGAGGAATGTCTGACAGTTGAACCCATTAACGAGTACGTCCAGAGCTGTGATATCGTAGCCTTCAACAAAATT 681 48.02 MAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSGEYVNVSRWSNHIAALLRVSAVFGEGSGVKFQSAEAIATPPAADAKAAADDDDDDDDVDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEESVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEECLTVEPINEYVQSCDIVAFNKI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16201339 16202879 + MC03g0961 Mch3g1353 684256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1353 227 Coils Coil 110 130 - -
Mch3g1353 227 FunFam Elongation factor 1-beta 1 like 132 227 - -
Mch3g1353 227 Gene3D - 3 76 - -
Mch3g1353 227 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 227 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Mch3g1353 227 Gene3D - 131 227 IPR014717 -
Mch3g1353 227 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 216 227 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1353 227 SMART EF1_GNE_2 138 227 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1353 227 CDD EF1B 136 227 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1353 227 FunFam Elongation factor 1-delta 1 3 78 - -
Mch3g1353 227 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Mch3g1353 227 Pfam EF-1 guanine nucleotide exchange domain 140 227 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Mch3g1353 227 SUPERFAMILY eEF-1beta-like 135 227 IPR036219 -
Mch3g1353 227 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 102 110 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1350 Mch-Chr3:16173515 Mch3g1353 Mch-Chr3:16201339 9.12E-109 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1353 K03232 - csv:101215827 335.109