Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1395 ATGTTTAGTTTAGTTTATAGTTTAATCACGCAATTAACATTTAACCCAGCCCCCCCCCTTCCCTTTAATCTCTTTATATACTCCTCTCCGTTCCTTCCTTCTTTTCTCACTCCCACTCCCACTCCCAAACTTCCATTAATGGCGTCCACACTCCCAATTTCTCTCTCTCTCCTCTCTCTCTCCGTCCTCCTACTCCTCATCCCCACCACTCTCTCCGCCGCCCCTGCCGCCGTCCGGGACCCAGAGCTCGTCGTACAAGAAGTACACAGGAGCATAATTAATGCGACGAAGAGGAGGAATTTGGCGTATCTCTCGTGTGGGACTGGTAATCCGATCGACGATTGCTGGCGCTGCGATTCCAATTGGGAGAAGAATCGGCAGCGGCTGGCGGACTGTGCGATTGGGTTCGGGAAGAACGCCATTGGCGGGAGGGACGGCCAAATCTACGTCGTCACCGACGCCGGCGACGACGACCCGGTCAACCCCAAGCCGGGGACTCTCCGGTACGCCGTGATCCAAGACGAGCCGCTCTGGATCATCTTCGCCCGCGACATGGTGATCCGACTGAAGGAAGAGCTGATCATGAACTCGTTCAAGACCATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGGCCCTGCATCACGATCCAGTACGTGACCAACATTATAATCCACGGCCTCAACATTCACGACTGCAAGCCCGGGGGGAACACCGACGTGAGAGACTCCCCGCGGCATTTCGGGTTCCGAACCATATCGGACGGCGACGGCGTTTCGATCTTCGGCGGGAGTCATGTGTGGGTGGACCATTGCTCGCTCTCCAACTGTAACGATGGCCTAATCGACGCCATTCATGGCTCCACCGCCATCACCATCTCCAACAATTACATGACGCACCACGATAAAGTTATGCTGTTGGGCCACAGCGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATCGCCTTCAATCACTTCGGCGAAGGCCTCGTCCAGAGAATGCCCAGATGCAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACACATTGGGAAATGTACGCCATTGGAGGCAGTGCTGCCCCAACCATCAACAGTCAAGGGAACAGATTCGTAGCGCCAGATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGAGGCGCCAGAGAGTGAGTGGAAGAATTGGAACTGGAGGTCGGAAGGGGATCTGATGTTAAACGGTGCGTTTTTCACTGCTTCCGGCGCCGGAGCGTCGTCCAGCTACGCCAGAGCTTCGAGCTTGGGGGCGAGGCCGTCGTCGCTCGTCGGAACGATAACGACCAATGCGGGTGCGCTGAGCTGCAGGAAGGGCTCCCGCTGCTGA 1377 55.99 MFSLVYSLITQLTFNPAPPLPFNLFIYSSPFLPSFLTPTPTPKLPLMASTLPISLSLLSLSVLLLLIPTTLSAAPAAVRDPELVVQEVHRSIINATKRRNLAYLSCGTGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEEAPESEWKNWNWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALSCRKGSRC 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16452225 16454632 + MC03g0997 Mch3g1395 684298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1395 458 SMART amb_all 184 381 IPR002022 -
Mch3g1395 458 Pfam Pectate lyase 194 375 IPR002022 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 400 424 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 156 181 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 192 208 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 256 277 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 132 149 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 358 377 IPR018082 -
Mch3g1395 458 PRINTS Pollen allergen Amb family signature 429 452 IPR018082 -
Mch3g1395 458 PANTHER PECTATE LYASE 18-RELATED 66 455 IPR045032 GO:0030570(InterPro)
Mch3g1395 458 Gene3D - 109 451 IPR012334 -
Mch3g1395 458 SUPERFAMILY Pectin lyase-like 85 453 IPR011050 -
Mch3g1395 458 FunFam Pectate lyase 109 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1736 Mch-Chr1:17899341 Mch3g1395 Mch-Chr3:16452225 1.98E-150 dispersed
Mch3g1267 Mch-Chr3:15646586 Mch3g1395 Mch-Chr3:16452225 1.88E-145 dispersed
Mch3g1395 Mch-Chr3:16452225 Mch5g0169 Mch-Chr5:1075846 2.10E-215 dispersed
Mch3g1395 Mch-Chr3:16452225 Mch4g2173 Mch-Chr4:23547285 3.22E-236 wgd
Mch3g1395 Mch-Chr3:16452225 Mch8g0067 Mch-Chr8:378620 2.13E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1395 K01728 - csv:101209736 765.377