Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1403 ATGGCAGAGCTAACGAGGAACCCACAAGCGATGAAGAAAGTTCAAGAAGAAATTAGAAGGATAGTTGGAAAGAAGACAAAGATTGAGATGGAGGATACTAAAAAGATGGAGTACATGAACTGTGTGATAAAAGAGTCTCTGAGATTGCATCCACTAGCTCCTCTACTTGTACCGCGAGAAACATCGGGAATCGTAACCTTAGAAGAAAGCTACCAAATTCCATCAAAAACCAGCATTTGGATCAATGCTTGGGCGATACAAAGAGACCCCGAGACTTGGGAGAGCCCAAACGAGTTCATCCCAGAGAGATTCATGGAGAAGAATTCAGTTGATTTCAAAGGCCAAGACTTTGAATTCATTCCATTTGGGAGTGGAAGGAGGAAGTGTCCTGCAATTTCGTTTGGGCTTGCTTCTTTTGAATATGTATTGGCCAACCTTTTGTACTGGTTCGATTGGAAGCTGCCGGAGGAGATGGCCGGCGAATTGGATATTAGTGAAGAACATGGCCTCACTGTTCGCAAGAAAATTCCCCTTCATCTCAACCCAATTCCATATACTATGTAA 564 43.09 MAELTRNPQAMKKVQEEIRRIVGKKTKIEMEDTKKMEYMNCVIKESLRLHPLAPLLVPRETSGIVTLEESYQIPSKTSIWINAWAIQRDPETWESPNEFIPERFMEKNSVDFKGQDFEFIPFGSGRRKCPAISFGLASFEYVLANLLYWFDWKLPEEMAGELDISEEHGLTVRKKIPLHLNPIPYTM 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16538760 16539610 + MC03g_new0403 Mch3g1403 684306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1403 187 FunFam Predicted protein 1 180 - -
Mch3g1403 187 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 122 131 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Mch3g1403 187 SUPERFAMILY Cytochrome P450 1 184 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PANTHER CYTOCHROME P450 71B11-RELATED 1 183 IPR050193 -
Mch3g1403 187 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PRINTS P450 superfamily signature 120 129 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 Pfam Cytochrome P450 2 162 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 Gene3D Cytochrome P450 1 181 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PRINTS E-class P450 group I signature 129 152 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PRINTS E-class P450 group I signature 82 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PRINTS E-class P450 group I signature 119 129 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch3g1403 187 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1403 Mch-Chr3:16538760 Mch3g1406 Mch-Chr3:16554593 7.18E-91 dispersed
Mch3g1402 Mch-Chr3:16525446 Mch3g1403 Mch-Chr3:16538760 4.85E-103 tandem
Mch3g1403 Mch-Chr3:16538760 Mch3g1404 Mch-Chr3:16546833 2.08E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1403 K20617 - csv:101207136 280.411