Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1414 ATGTCTCAGGAATTGTCATTGGATCAAGACCTGGACGAATCTGATCCCGAGTTCGTGGAGATTGATCCTACTGGTCGATATGGACGGTATAAGGAAATTTTAGGAAAAGGGGCGTACAAAAAAGTATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGATTAAGGTAACAGATGTATTGCGGAACTCTGAAGATTTGGAGCGACTCTATTCAGAAGTTCATTTGCTCAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAACATCAACTTCATTACCGAGATATTCACTTCAGGGACACTACGGCAATATAGAAAGAAACACAAGCATGTTGATTTGAGGGCTCTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATCGGTGACCTGGGACTTGCTGCCATTCTTCAGCAGGCTCGTTCGGCTCACAGTGTTATTGGGACACCGGAGTTTATGGCGCCAGAGCTGTACGAGGAGGAATATAATGAGCTTGTGGATATTTATGCCTTCGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATGTCGAATGTGCAAATGCTGCTCAAATATATAAGAAGGTCTCATCAGGGATAAAGCCAGCTTCTTTGGCAAAAGTCACCAATCCTGGAGTTAAAGCACTTATAGAAAAATGTATTGCAAATGTCTCTGACCGCCTACCTGCAAAAGACCTTTTAAGGGATCCATTTCTCCTAGCAGATGATGATCATGAAAGAATAACTCGTCACTTAAAAAACAAGACACAACACACAGAAGAAAAGAGAGAGCAGCTCCATATCGATAGATGTACAGATGATACTTCTGCTGAGACTACCAGAGACTTCAGCATGCATGGTCAGAGAAAAGATGTTAACAAGATATTTCTCAAATTACGAATTGCTGACGCCTTGGGTAATGTCCGCAACATCCATTTCCCATTTGATATTGAAGCCGACACAGCAATTTCTGTTGCAAGTGAAATGGTCGAGGAATTGGACCTTTCAGATCAAGATGTCTCCACAATTTCTGAAATGATCGAAACTGAAATCCGGTCCTACATTCCAGACTGGACATCAGTTGAGTATGGTGTAGATAATGTAGGGGGAGATGTTGCAATTTCTGATAGCTCTCCATCTGAAACGAGGAATGGTGCCTCTCCCTTGTCTATTGAATCTGGTAACCTTGCATTAGAGATAATGCCTTCAGGTCGTAAGTACTGGTCTGACTCTCCAAAGGGAATTGGTGGGTGCTCTCCTGTTAAGCCAGGTCCTTCAAACTTGTCTTGTATGGATCAGAATGTTGAATCTTCTGGCAGCCACATGCCTAGGGATAATCTAGATCATGCTGCTATAATTAAGGGACTGGAAAGTGAGCTTTTGTCTGATTATGGCGGTAATGGCGGGCAGGATGAGGGTAGCTCAACTACAAATCTTCATGCTAGCTCTGATGCACACCCTTCAGAAGAGAACTGTGGAGTTTCAGAACGTGATGAATCAGAATTCATCGAGGTAATGGCTGAAAAACTTGATAAACTGTTGATACAGCAGCAAAAGGAATTAGATGAGCTAAAGAGGGAGCATAAATTAGTTATTTCAGAACTTTTGAGTGAACTTACACCTGAGTCCTATGAGAAGGTTTTAAGGATATGCAAGCTAGAGCCTTCTGATTATGACTCGGGTCTCTGA 1830 41.58 MSQELSLDQDLDESDPEFVEIDPTGRYGRYKEILGKGAYKKVYRAFDELEGIEVAWNQIKVTDVLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVSSGIKPASLAKVTNPGVKALIEKCIANVSDRLPAKDLLRDPFLLADDDHERITRHLKNKTQHTEEKREQLHIDRCTDDTSAETTRDFSMHGQRKDVNKIFLKLRIADALGNVRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWTSVEYGVDNVGGDVAISDSSPSETRNGASPLSIESGNLALEIMPSGRKYWSDSPKGIGGCSPVKPGPSNLSCMDQNVESSGSHMPRDNLDHAAIIKGLESELLSDYGGNGGQDEGSSTTNLHASSDAHPSEENCGVSERDESEFIEVMAEKLDKLLIQQQKELDELKREHKLVISELLSELTPESYEKVLRICKLEPSDYDSGL 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16598092 16604566 + MC03g1006 Mch3g1414 684317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1414 609 CDD STKc_WNK 26 286 - -
Mch3g1414 609 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Mch3g1414 609 MobiDBLite consensus disorder prediction 509 541 - -
Mch3g1414 609 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
Mch3g1414 609 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Mch3g1414 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 565 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Mch3g1414 609 Coils Coil 554 581 - -
Mch3g1414 609 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Mch3g1414 609 MobiDBLite consensus disorder prediction 515 536 - -
Mch3g1414 609 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 344 398 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Mch3g1414 609 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1414 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g1414 609 Gene3D - 340 410 - -
Mch3g1414 609 MobiDBLite consensus disorder prediction 301 332 - -
Mch3g1414 609 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Mch3g1414 609 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g1414 609 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0481 Mch-Chr2:3481067 Mch3g1414 Mch-Chr3:16598092 1.13E-120 dispersed
Mch3g1414 Mch-Chr3:16598092 Mch8g2922 Mch-Chr8:31967533 1.39E-157 dispersed
Mch3g1414 Mch-Chr3:16598092 Mch7g1064 Mch-Chr7:14680084 5.33E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77280 PF00069 Pkinase 1.30E-50 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1414 K08867 - csv:101206177 1007.28