Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1425 ATGGGTTCATCATCAAGAAGCAGCCCCCATTACTACAGCCCATGCGCAGCCTGCAAGTTCCTAAGGAGAAAATGCTTACCAGAATGCGATTTTGCACCATATTTCCCACCAGAAGAGCCCCAAAAATTCGCCAACGTCCACAAGGTGTTTGGAGCCAGCAACGTGGGGAAGCTGCTGAAGGAGGTTCCCCCTCACCAAAGGGCAGACGCCGTCGTTTCACTGGCGTATGAAGCCGAGGCTAGAATCAGAGATCCTGTCTATGGCTGCGTGGGCGCCATCTCCTGCCTCCAAAAGCAACTCCACGGCCTCCAGAAGGAACTTGATGCTGCAAAAGCTCGCCTTTTTCTCTACTCTTCCACTGCTGATTTCTCTTCTCCACTCATTTGGAACAACCATATT 399 51.63 MGSSSRSSPHYYSPCAACKFLRRKCLPECDFAPYFPPEEPQKFANVHKVFGASNVGKLLKEVPPHQRADAVVSLAYEAEARIRDPVYGCVGAISCLQKQLHGLQKELDAAKARLFLYSSTADFSSPLIWNNHI 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16660368 16660766 + MC03g1017 Mch3g1425 684328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1425 133 Coils Coil 93 113 - -
Mch3g1425 133 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 117 - -
Mch3g1425 133 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Mch3g1425 133 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1425 Mch-Chr3:16660368 Mch8g2579 Mch-Chr8:28931017 3.64E-52 dispersed
Mch3g1425 Mch-Chr3:16660368 Mch4g2198 Mch-Chr4:23699283 8.61E-56 wgd
Mch3g1425 Mch-Chr3:16660368 Mch6g0126 Mch-Chr6:743224 4.82E-59 wgd
Mch3g1425 Mch-Chr3:16660368 Mch8g1482 Mch-Chr8:11184109 3.00E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43058 PF03195 LOB 1.40E-41 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1425 - - - 0.0