Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1442 ATGCAGAGTTCTGCTGTTACCTTATCGCCTTCTCTCCCTCTTCTCAAGCCTCGAAGGCCTCGGAGCTCGACCTTCACCTCTGGATTTAACTCAATTCGGCTATCTTCTTCGTCTTCCGGCAATTCCAGAGATCTCGGAGACCTGAATAATGTTGGACTGTCTTCCTCTTGGCCTCGGCGATCCTGGACTCTGTCGTCGTCTCCGTTTTCTTCCTCAAAACTGAGGCCATGGACCGGTGCGCCCTTGCTTGCTTCGGAGTCCGATGCGAGTATTTTCAAGGTTCAGGCCACTGCGGTGCCGGACAGCGCAGGGGAGAGTGCCAGTGCTGGCGGTAGCCTAGCGAAAACGTTGGAGCTTGGATTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTCCTCAAGGTATATCCATTCCCTGTAACTGTCACCGCAGTTCAATTTGCTGTTGGCACTGTACTTGTTCTTCTTATGTGGGGACTTAATCTCTACAAAAAGCCAAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTGCCGCTGGCATTCGTTCACACCTTGGGAAATCTTTTTACAAACATGAGTCTTGGGAAAGTGGCTGTATCATTCACTCACACAATCAAAGCTATGGAGCCCTTTTTTTCAGTGGTCCTGTCAGCAATGTTTCTTGGAGAGATTCCTACTCCATGGGTACTTGCATCCCTTCTGCCAATTGTTGGTGGTGTTGTACTAGCATCTGCCACCGAGGCCTCCTTCAACTGGGCTGGATTTTCGAGTGCAATGGCATCCAATTTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGATTCAATTGACAACATCACGCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTATTGGCTCCTGTGGCTATCTTCATGGAAGGTGTCAAGTTTACTCCTGCATACCTTCAATCAGCTGGATTGAATGTGAAACAAGTTTGCGCAAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCAGTAGGCAACTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCTATCAACTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTGTATTCAAGGGTGAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1260 46.83 MQSSAVTLSPSLPLLKPRRPRSSTFTSGFNSIRLSSSSSGNSRDLGDLNNVGLSSSWPRRSWTLSSSPFSSSKLRPWTGAPLLASESDASIFKVQATAVPDSAGESASAGGSLAKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKKPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGEIPTPWVLASLLPIVGGVVLASATEASFNWAGFSSAMASNLTNQSRNVLSKKVMVKKEDSIDNITLFSIITVMSFFLLAPVAIFMEGVKFTPAYLQSAGLNVKQVCARSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16764088 16768166 + MC03g1034 Mch3g1442 684345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1442 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 310 410 - -
Mch3g1442 419 PANTHER SOLUTE CARRIER FAMILY 35 115 408 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Mch3g1442 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 252 - -
Mch3g1442 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Mch3g1442 419 MobiDBLite consensus disorder prediction 1 27 - -
Mch3g1442 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1442 Mch-Chr3:16764088 Mch5g0285 Mch-Chr5:1948274 9.75E-74 dispersed
Mch3g1442 Mch-Chr3:16764088 Mch4g2209 Mch-Chr4:23756225 4.09E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1442 K15283 - csv:101203848 676.011