Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g1443 ATATTCTCTATCCTATCATGCTCTGTAAGCTTCAAAACTCAAATTGACTTCAACGAAAATGTGTTTTATAGGCTTCCTACAAGTACCCAACACTCGGAGAAGAAATGTAATATCCTCATACACTTAATATCTCAAAAGAAAAGGGGAAAATTCCGCTCACATACCTTCTTGTTCACGAAATATTCGTTCAACATGGAAGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATAAGAGGAAGACTTCTATGCTACAGACAGGATTGGACTGGCGGCTTTCGCTCTGGTATCAGGATCTTGGCCCCAACAACCTACATATTCTTTGCTTCAGCAATTCCAGTTATATCATTTGGGGAGCAGCTAGAAAGGAATACATATGGGACTCTGACTGCAGTACAAACTCTAGCATCAACAGCACTTTGTGGCATCATCCACTCAATCTTTGGGGGACAGCCTCTTCTCATCCTTGGGGTCGCTGAACCAACTGTTTTGATGTATACATTTATGTTCGACTTTGCAAAGGACCGAAAGGAACTAGGACAGGAACTATTCTTAGCCTGGACGGGATGGGTATGTGTATGGACAGCCATATTGCTTTTCTTGCTGGCTGTGCTGGGTGCGTGCTCGCTGATCAACAGGTTTACGCGTGTTGCTGGAGAATTGTTTGGTCTGCTGATTGCTATGCTCTTTATGCAGCAGGCGATACGTGGTGTTGTGGAGGAATTTGGCATACCTCAGAGGGAAAATCCTAATCAGGTGGCACTTCAACCTCCTTGGCGCTTTGGCAATGGAATGTTCGCTTTAGTGCTGTCCTTCGGGCTTCTACTAACTGCACTTAAAAGCCGCAAGGCTAGATCATGGCGCTATGGGACTGGCTGCTTACGGGGCATTATCGCGGATTATGGGGTCCCACTTATGGTGCTCGTATGGACTGCATTATCTTATATTCCAGTTAACGATGTCCCACTAGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCGTGGTGCCTACACAAATTGGACGGTTATAACGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTCTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAGCCAGCTTCATATCATTATGATCTTCTTCTCCTAGGTTTCCTTGTCATACTTTGTGGACTTATAGGCATACCACCTTCCAATGGTGTAATTCCTCAGTCTCCGATGCACACAAAAAGCTTAGCTACCCTTAAACATCAGCTTTTGCGGAACAAGCTGGTAGCAGCAGCACGACAAAGTTTCCGTAAAAATTCGAACTTGAGTCAATTATACAGGAACATGCAAGAGGCATATAATGAGATGCAGACTCCTTTAATTTACCAAAATCCACCAGCTGTGGGGCTGAAGGAGTTGAAAGATTCCACAATCCAGCTTGCTTCAAGAACTGGCTACATTGATGCCCCTGTTGATGAAACTATTTTCGATGTTGATAAAGATATTGATGATCTCCTGCCGGTGGAGGTTAAAGAACAGCGTCTCAGCAATTTGCTGCAGGCAATAATGGTTGGTGGTTGTGTTGCTGCCATGCCTCTTTTAAAGAAGATCCCGACTTCAGTCCTTTGGGGCTACTTTGCTTTCATGGCAATCGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTCCTAGAAACTGTCCCCTTCAAAACAATTGCCACCTTCACCCTGTTTCAGACAGTGTATCTACTGATGTGTTTCGGTTTAACCTGGATTCCGATCGCTGGCGTTCTTTTCCCACTGTTGATCATGCTCCTTGTCCCCGTGCGGCAGTATGTGCTCCCAAGGTTTTTCAAAGGTGCACATCTTCAGGATTTGGATGCTGCAGAATATGAGGAAGCCCCTGCAATCGCTTTTAACCCGTCATTCGAAGATCGTGTGGGAATAACTCCCAACATCGACGATGGTGAAATACTCGACGAGATGATCACAAGAAGCCGTGGTGAGATTCGGCGTACGCAGAGTTCAAAAGTGACAAGCTCAACTCCGAGTTCTGTAGAGGGCACCAAACCCGGCTACTACAGCCCACAGAAACTGTACAGTCCTCGGATCAGTGAGCTGAGAAGAGAGAGAAGTTCTCTATCTCCTGGAAAAGGACTCGACTTGAAGCCAAGTCCTAGCCCAGAACCAGGAACAGGGCCAGGACCATCATTTAGAAAGTAG 2334 45.12 IFSILSCSVSFKTQIDFNENVFYRLPTSTQHSEKKCNILIHLISQKKRGKFRSHTFLFTKYSFNMEETFFPFRGIKNDIRGRLLCYRQDWTGGFRSGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSIFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRVAGELFGLLIAMLFMQQAIRGVVEEFGIPQRENPNQVALQPPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGIIADYGVPLMVLVWTALSYIPVNDVPLGIPRRLFSPNPWSRGAYTNWTVITEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVAAARQSFRKNSNLSQLYRNMQEAYNEMQTPLIYQNPPAVGLKELKDSTIQLASRTGYIDAPVDETIFDVDKDIDDLLPVEVKEQRLSNLLQAIMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYVLPRFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRVGITPNIDDGEILDEMITRSRGEIRRTQSSKVTSSTPSSVEGTKPGYYSPQKLYSPRISELRRERSSLSPGKGLDLKPSPSPEPGTGPGPSFRK 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16766892 16776842 - MC03g1035 Mch3g1443 684346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g1443 777 Gene3D Helical hairpin bin 82 124 - -
Mch3g1443 777 MobiDBLite consensus disorder prediction 702 777 - -
Mch3g1443 777 PANTHER ANION EXCHANGE PROTEIN 24 702 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Mch3g1443 777 MobiDBLite consensus disorder prediction 710 728 - -
Mch3g1443 777 FunFam probable boron transporter 2 82 124 - -
Mch3g1443 777 Pfam HCO3- transporter integral membrane domain 266 436 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Mch3g1443 777 Pfam HCO3- transporter integral membrane domain 524 666 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Mch3g1443 777 Pfam HCO3- transporter integral membrane domain 71 243 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1443 Mch-Chr3:16766892 Mch8g2109 Mch-Chr8:24148031 0 dispersed
Mch3g1443 Mch-Chr3:16766892 Mch8g1149 Mch-Chr8:8182561 2.45E-274 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g1443 K24194 - csv:101203606 1323.53